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86 Open 38 Closed
86 Open 38 Closed
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Issues list

transfer obsolete EC nodes to replacement
#268 opened Nov 22, 2024 by realmarcin
EC ontology transform truncates .- in ECs
#267 opened Nov 21, 2024 by realmarcin
nodes with spaces in ids
#265 opened Nov 7, 2024 by realmarcin
assay: nodes with spaces in id
#264 opened Nov 7, 2024 by realmarcin
EC: has many categories
#263 opened Nov 4, 2024 by realmarcin
1
3
cell_shape: has three categories
#262 opened Nov 4, 2024 by realmarcin
strains and data from JMC
#261 opened Nov 1, 2024 by realmarcin
biolog data
#260 opened Oct 17, 2024 by realmarcin
Jenkins build fails due to old python version
#256 opened Sep 26, 2024 by hrshdhgd
7
core vs merge repo node and edge header vs column content differences
#255 opened Sep 26, 2024 by realmarcin
ROBOT default memory 64G not enough?
#254 opened Sep 26, 2024 by realmarcin
potential duplicate assay nodes
#253 opened Sep 26, 2024 by realmarcin
A few BactoTraits columns that are missing
#252 opened Sep 19, 2024 by realmarcin
2
exclude duplicate UniProt proteomes and relax protein count filter
#251 opened Sep 18, 2024 by realmarcin
1
assign ENVO for bacdive isolation_sources
#248 opened Sep 17, 2024 by realmarcin
NCBITaxon to CHEBI via location_of -- weird location and also predicate upgrade
#246 opened Sep 16, 2024 by realmarcin
2
revisit taxonomy trimming, check top level roots
#239 opened Aug 31, 2024 by realmarcin
two subclass edges for strain
#235 opened Aug 29, 2024 by realmarcin
2
~90 mediadive edges have empty subjects
#231 opened Aug 24, 2024 by realmarcin
disbiome transform happens without specifying in transform.py transforms list
#218 opened Aug 21, 2024 by realmarcin
upa_nodes.tsv: All rows should have 14 columns
#204 opened Aug 4, 2024 by hrshdhgd
@bsantan
2
ec_nodes.tsv columns are scrambled
#203 opened Aug 4, 2024 by hrshdhgd
@bsantan
reconcile oaklib .cache db files VS downloaded ontologies
#202 opened Aug 2, 2024 by realmarcin
2
ingest GTDB
#198 opened Jul 23, 2024 by realmarcin
multiprocessing connection errors on NERSC
#197 opened Jul 23, 2024 by realmarcin
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