KG-Microbe -- Knowledge graph construction for microbial traits and beyond

Conference paper

Semantic Scholar

KG-Microbe @KG-Hub

Setup

Create a vrtual environment of your choice.
Install poetry using pip install poetry
poetry install
git clone https://github.com/Knowledge-Graph-Hub/kg-microbe.git
cd kg-microbe

Download resources needed

poetry run kg download : This will download the resources needed for this project.

Transform

poetry run kg transform: This transforms the resources into knowledge graphs (KGs).

Merge

poetry run kg merge: This merges all transformed graphs above.

Release

Requirements

In order to be able to make KG releases on this repository, you'll need:

Appropriate permissions to this repository.
A Github token that has permissions on this repository. This is how you set it in GitHub. Make sure your token has access to this project.
Save this token locally assigned to the environemnt variable GH_TOKEN
```
export GH_TOKEN = XXXX
```
or add it to your ~/.bash_profile or ~/.bashrc file.

Contributors

Please remember to run poetry run tox before every commit to make sure the code you commit is error-free.

Acknowledgements

This cookiecutter project was developed from the kg-cookiecutter template and will be kept up-to-date using cruft.