v0.9.6

**** kourami-0.9.6_bin.zip contains pre-compiled jar and does NOT contain source files ****

• log filename now ends with ".log" extension
• assembled HLA sequences are outputted to filename ending with ".typed.fa"
• allele-specific min depth is outputted for each assembled allele (This can be used to get a sense of confidence on the assembled sequences)

v0.9.5

-Added support for DRB3 and DRB5 loci
-Fixed ALT filtering routine in alignAndExtract scripts
-Added JDK/JRE version requirement for maven and ant
-Fixed minor bugs (CLI parsing, bubble path pruning)
-Added download_panel.sh to allow automatics downloading and bwa-index of Kourami panel.

v0.9.4

-Added support for processing additional HLA loci (optional)
-Added support for preparing a custom DB or other IMGT releases
-Precompiled jar (kourami_v0.9.4_bin.tar.gz) contains all the directory structures included from v0.9.4 and later.

v0.9.2

added preprocessing scripts to generate input bam to Kourami.

Added some input validation.

Kourami v0.9.1

Kourami version 0.9.1

Initial public release of Kourami

First release!