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59 Open 194 Closed
59 Open 194 Closed
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Issues list

get_org.log.txt and the assembly_graph.fastg.*.fastg file(s)
#363 opened Nov 30, 2024 by rashedbtcu
1 of 3 tasks
Termination of mitochondrial assembly
#360 opened Nov 23, 2024 by xhx-1
1
The chloroplast genome assembly resulted in only small fragments.
#359 opened Nov 22, 2024 by WANGLU225
Getting stuck at Slimming assembly graph during get_organelle_from_assembly.py
#351 opened Oct 30, 2024 by bwesen
2
The chloroplast genome assembly is not a circle structure
#349 opened Sep 18, 2024 by xhx-1
1
MemoryError
#347 opened Sep 12, 2024 by wkkdmx
4 of 6 tasks
Error with running SPAdes: == Error == exception caught: <class 'AttributeError'>
#345 opened Aug 24, 2024 by oddguyeee
3 tasks
9
(ERR): bowtie2-align died with signal 9 (KILL)
#343 opened Aug 9, 2024 by zonglanlan
Extended SPAdes was created for low quality sequence read instead complete assembly
#341 opened Jul 31, 2024 by timurrxxcd
2
something went wrong when using -F anonym without --target-genome-size
#337 opened Jun 7, 2024 by sixpoints
get_organelle_from_reads.py can not find the embplant_nr db in SGE
#336 opened Jun 7, 2024 by xiefumin1
math domain error
#335 opened Jun 5, 2024 by smoothyly
Increase the insert size length to improve assembly completeness
#329 opened May 2, 2024 by zhengyanstu
2 of 3 tasks
1
Regarding the Use of Incomplete Plant Mitochondrial Genome Assembly Outputs for Subsequent Analysis
#317 opened Mar 14, 2024 by twdawd
2
Estimated XX base-coverage = 0.00 bug
#311 opened Feb 6, 2024 by MarjaHei
5
Slimming failed and no valid assembly graph found
#301 opened Dec 6, 2023 by poojancf
6
Discrepancy between get_organelle_from_reads and summary_get_organelle_output logs
#279 opened Jun 20, 2023 by marcelglueck
3 tasks done
1
Problems with canu-produced gfa processing
#265 opened May 10, 2023 by Hoberti
1
ERROR: Assembling failed due to SPAdes failure
#251 opened Mar 26, 2023 by njbayonav
4
Using the GFA file (p_utg) exported by hifiasm for assembly with the error "Slimming failed."
#246 opened Mar 17, 2023 by sunjinkkk
9
Error with OS return value: 22; Can anyone please help me with a solution ?
#245 opened Mar 15, 2023 by avvypaks
5
error using different seed
#235 opened Feb 9, 2023 by ilenia6
1
Error assembling the Arabidopsis test dataset (SPAdes errors)
#226 opened Jan 6, 2023 by jsmillergh
6
Multiple variants with structural variations; 'Consensus made' keeps repeating
#223 opened Dec 20, 2022 by SethMusker
2
ERROR: Error with running SPAdes: == Error == system call for: finished abnormally, OS return value: 21
#221 opened Dec 19, 2022 by VaninaTonzo
1
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