Restrict python<=3.10

environment-test.yml

@@ -8,7 +8,7 @@ dependencies:
   - morphman
   - paramiko
   - pip
-  - python >=3.8
+  - python <=3.10
   - git
   - pip:
       - scipy

environment.yml

@@ -8,7 +8,7 @@ dependencies:
   - morphman
   - paramiko
   - pip
-  - python >=3.8
+  - python <=3.10
   - git
   - pip:
       - scipy

src/vampy/automatedPreprocessing/automated_preprocessing.py

@@ -1,15 +1,17 @@
 import argparse
-import numpy as np
 import sys
-from morphman import get_uncapped_surface, write_polydata, get_parameters, vtk_clean_polydata, \
+from os import remove, path
+
+import numpy as np
+from morphman import get_uncapped_surface, write_polydata, read_polydata, get_parameters, vtk_clean_polydata, \
     vtk_triangulate_surface, write_parameters, vmtk_cap_polydata, compute_centerlines, get_centerline_tolerance, \
     get_vtk_point_locator, extract_single_line, vtk_merge_polydata, get_point_data_array, smooth_voronoi_diagram, \
     create_new_surface, compute_centers, vmtk_smooth_surface, str2bool, vmtk_compute_voronoi_diagram, \
     prepare_output_surface, vmtk_compute_geometric_features
-from os import remove, path
+
 # Local imports
 from vampy.automatedPreprocessing.moving_common import get_point_map, project_displacement, save_displacement
-from vampy.automatedPreprocessing.preprocessing_common import read_polydata, get_centers_for_meshing, \
+from vampy.automatedPreprocessing.preprocessing_common import get_centers_for_meshing, \
     dist_sphere_diam, dist_sphere_curvature, dist_sphere_constant, get_regions_to_refine, add_flow_extension, \
     write_mesh, mesh_alternative, generate_mesh, find_boundaries, compute_flow_rate, setup_model_network, \
     radiusArrayName, scale_surface, get_furtest_surface_point, check_if_closed_surface, remesh_surface