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Profile the objective#639

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dmbates merged 103 commits intomainJuliaStats/MixedModels.jl:mainfrom profileJuliaStats/MixedModels.jl:profileCopy head branch name to clipboardMay 4, 2023

+923-20

Commits

Commits on Sep 13, 2022

• Revising profiling of fixed-effects parameters.

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Commits on Sep 14, 2022

• Create a single Table from profileβ

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Commits on Sep 15, 2022

• Incorporate some of Phillip's suggestions.

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• use a copy of remat.λ when profiling, change initial

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Commits on Sep 16, 2022

• shallow copy ReMats

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• contravariance

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• Add tests, names in MixedModelProfile, export

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Commits on Sep 19, 2022

• using BSplineKit, add confint for model and prof

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• Add tests for confint, be more careful of types

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Commits on Sep 20, 2022

• Shuffle fields in profile object and adjust test

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• Document functions and structs

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Commits on Sep 21, 2022

• Initial profilelogσ with fixed stepsz

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• Add profilelogσ and tests

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• reformat

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• Suppress progress display on refits

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• Avoid destructuring to allow for LTS test

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Commits on Sep 22, 2022

• use Compat.jl for destructuring syntax

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Commits on Oct 2, 2022

• Add BSplineKit and TypedTables to Project.toml

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Commits on Oct 4, 2022

• New version of BSplineKit (w periodic splines)

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Commits on Oct 11, 2022

• Merge branch 'main' into profile

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Commits on Oct 18, 2022

• Merge branch 'main' into profile

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• Allow [email protected] for testing on LTS julia

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Commits on Oct 25, 2022

• Use profile generic, return a table.

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• Back out a comment, fix tests.

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Commits on Oct 26, 2022

• Merge branch 'main' of github.com:JuliaStats/MixedModels.jl into profile

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Commits on Nov 2, 2022

• Be more careful with initial values in profileσ

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• Copy the vector, not just the reference to it

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Commits on Nov 15, 2022

• profile function with sigma, beta and theta

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• Fix confint method and comparison values in tests.

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Commits on Nov 16, 2022

• Add estimate to confint table, smaller δj, tests

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Commits on Nov 20, 2022

• Store m and the vc's values. Use Tuples.

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Commits on Nov 23, 2022

• Per discussion of #639

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Commits on Nov 24, 2022

• Bump version of BSplineKit to allow extrapolation

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Commits on Nov 25, 2022

• Add and export objective! methods.

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Commits on Jan 7, 2023

• Split and update src/profile.jl

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• Minor correction in a test.

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• Merge branch 'main' into profile

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Commits on Jan 27, 2023

• Remove unused definition.

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• Export Table, add .tbl property for bootstrap.

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• Interim version of profiling, σs have problems.

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Commits on Jan 28, 2023

• Fix σ profiles by moving lowerbd on θ

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Commits on Jan 29, 2023

• Merge current main

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Commits on Jan 31, 2023

• Add documentation.

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Commits on Feb 3, 2023

• Require julia version 1.8 (b/c BSplineKit 0.14)

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• Add confint for bootstrap, clean up for profile.

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• Modify test to match current code

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• Bump julia version for documenter to 1,8

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Commits on Feb 7, 2023

• Bump version of Aqua

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• Check monotone splines. Comment out unused method

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• Add more tests of profiling. Clean up method use.

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Commits on Feb 8, 2023

• Merge branch 'main' of github.com:JuliaStats/MixedModels.jl into profile

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• Merge branch 'profile' of https://github.com/JuliaStats/MixedModels.jl into profile

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Commits on Feb 10, 2023

• 'tbl' field of MixedModelProfile as a Table

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Commits on Feb 16, 2023

• JuliaFormatter

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Commits on Feb 21, 2023

• JuliaFormatter.format("src")

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Commits on Feb 22, 2023

• Merge branch 'main' into profile

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• Clean up warning message.

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Commits on Feb 28, 2023

• Merge branch 'main' into profile

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• Return raneftables as a NamedTuple of DictTables

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• Update src/mixedmodel.jl

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Commits on Mar 1, 2023

• Return a NamedTuple of Tables - easier to sort.

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Commits on Mar 10, 2023

• Merge branch 'main' into profile

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Commits on Mar 17, 2023

• drop Compat

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Commits on Mar 20, 2023

• Update src/profile/fixefpr.jl

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• Update src/MixedModels.jl

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• Update src/linearmixedmodel.jl

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• Update src/profile/utilities.jl

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• Replace Tuple type with stronger NTuple{N,Symbol}

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• Update src/profile/sigmapr.jl

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Commits on Mar 21, 2023

• add CI method comparison

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• Merge branch 'profile' of github.com:JuliaStats/MixedModels.jl into profile

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• Update src/profile/vcpr.jl

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Commits on Mar 22, 2023

• Fix a syntax error

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• Remove unnecessary qualifiers

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Commits on Apr 12, 2023

• Merge branch 'main' of github.com:JuliaStats/MixedModels.jl into profile

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• Merge branch 'main' into profile

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Commits on Apr 13, 2023

• Bump compat for BSplineKit

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• JuliaFormatter change

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Commits on Apr 15, 2023

• Merge branch 'main' into profile

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Commits on Apr 17, 2023

• Changes suggested in palday's review.

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Commits on Apr 26, 2023

• Merge branch 'main' into profile

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Commits on May 3, 2023

• Merge branch 'main' of github.com:JuliaStats/MixedModels.jl into profile

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• Add news

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• version bump

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Commits on May 4, 2023

• Add docstring and drop type parameter

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• Document MixedModelProfile struct

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• Document a method as internal and potentially volatile

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• Document confint method

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• Document confint method

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• Document profilevcl

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• Document the internal method profileσs!

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• Refine target values in test/pls.jl

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• correct a typo of dot as separator

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• Generalize a type comparison in test/pls.jl

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• Generalize a type comparison in test/pls.jl [ci skip]

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• Suppress progress updates in profile in tests [ci skip]

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• Gene

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• fix indents

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