BACKPORT: mimeshow RE without FE

NEWS.md

@@ -1,3 +1,7 @@
+MixedModels v3.5.1 Release Notes
+========================
+* Fix MIME show methods for models with random-effects not corresponding to a fixed effect [#501].
+
 MixedModels v3.5.0 Release Notes
 ========================
 * The Progressbar for `parametricbootstrap` and `replicate` is not displayed
@@ -170,3 +174,4 @@ Package dependencies
 [#484]: https://github.com/JuliaStats/MixedModels.jl/issues/484
 [#493]: https://github.com/JuliaStats/MixedModels.jl/issues/493
 [#495]: https://github.com/JuliaStats/MixedModels.jl/issues/495
+[#501]: https://github.com/JuliaStats/MixedModels.jl/issues/501

Project.toml

@@ -1,7 +1,7 @@
 name = "MixedModels"
 uuid = "ff71e718-51f3-5ec2-a782-8ffcbfa3c316"
 author = ["Phillip Alday <[email protected]>", "Douglas Bates <[email protected]>", "Jose Bayoan Santiago Calderon <[email protected]>"]
-version = "3.5.0"
+version = "3.5.1"
 
 [deps]
 Arrow = "69666777-d1a9-59fb-9406-91d4454c9d45"

src/mimeshow.jl

@@ -141,6 +141,22 @@ function _markdown(m::MixedModel)
         push!(rows, newrow)
     end
 
+    re_without_fe = setdiff(mapfoldl(x -> Set(getproperty(x, :cnames)), ∪ , m.reterms), coefnames(m))
+
+    for bname in re_without_fe
+        newrow = [bname, "", "", "", ""]
+        bname = Symbol(bname)
+
+        for (j, sig) in enumerate(m.σs)
+            if bname in keys(sig)
+                push!(newrow, Ryu.writefixed(getproperty(sig, bname),digits))
+            else
+                push!(newrow, " ")
+            end
+        end
+        push!(rows, newrow)
+    end
+
     if dispersion_parameter(m)
         newrow = [_dname(m), Ryu.writefixed(dispersion(m),digits), "", "", ""]
         for rr in fnames(m)

test/mime.jl

@@ -13,12 +13,19 @@ include("modelcache.jl")
 gm3 = GeneralizedLinearMixedModel(only(gfms[:verbagg]), dataset(:verbagg), Bernoulli())
 pirls!(setβθ!(gm3, βθ))
 
-fm0θ = [ 1.1656121258575225]
+fm0θ = [1.1656121258575225]
 fm0 = updateL!(setθ!(first(models(:sleepstudy)), fm0θ))
 
 fm1θ = [0.9292213288149662, 0.018168393450877257, 0.22264486671069741]
 fm1 = updateL!(setθ!(last(models(:sleepstudy)), fm1θ))
 
+fmreθ = [0.32352483854887326, 0.4715395478019364, 0.0,
+         0.43705610601403755, 0.016565641868150047, 0.17732248078617097]
+# this is a junk model, but it stresses parts of the display code
+fmre = LinearMixedModel(@formula(rt_trunc ~ 1+(0+spkr|subj)+(1+load|item)), MixedModels.dataset(:kb07))
+updateL!(setθ!(fmre, fmreθ))
+fmre.optsum.feval = 1
+
 lrt = likelihoodratiotest(fm0, fm1)
 
 @testset "markdown" begin
@@ -43,6 +50,18 @@ lrt = likelihoodratiotest(fm0, fm1)
 """
     end
 
+    @testset "re without fe" begin
+        @test sprint(show, mime, fmre) == """
+|             |      Est. |      SE |     z |      p |   σ_subj |   σ_item |
+|:----------- | ---------:| -------:| -----:| ------:| --------:| --------:|
+| (Intercept) | 2092.3713 | 76.9426 | 27.19 | <1e-99 |          | 349.7858 |
+| spkr: old   |           |         |       |        | 377.3837 |          |
+| spkr: new   |           |         |       |        | 258.9242 |          |
+| load: yes   |           |         |       |        |          | 142.5331 |
+| Residual    |  800.3224 |         |       |        |          |          |
+"""
+    end
+
     @testset "glmm" begin
         @test sprint(show, mime, gm3) in ("""
 |              |    Est. |     SE |     z |      p | σ_subj | σ_item |