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New Motion

New Motion #314

Triggered via pull request September 13, 2024 18:31
Status Failure
Total duration 17m 31s
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28 errors
Julia 1.10 - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
Julia 1.10 - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
Julia 1.10 - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
Julia 1.10 - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
Julia 1 - ubuntu-latest - x64 - pull_request
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Julia 1 - ubuntu-latest - x64 - pull_request
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Julia 1 - ubuntu-latest - x64 - pull_request
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Julia 1 - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/tutorial/03-ChemicalShiftEPI.md:18-24 ```@example 03-ChemicalShiftEPI obj = brain_phantom2D() # a slice of a brain p1 = plot_phantom_map(obj, :T2 ; height=400, width=400, view_2d=true) p2 = plot_phantom_map(obj, :Δw ; height=400, width=400, view_2d=true) savefig(p1, "../assets/2-phantom1.html") # hide savefig(p2, "../assets/2-phantom2.html") # hide ``` exception = UndefVarError: `ph` not defined Stacktrace: [1] plot_phantom_map(obj::Phantom{Float64}, key::Symbol; height::Int64, width::Int64, darkmode::Bool, view_2d::Bool, colorbar::Bool, intermediate_time_samples::Int64, max_time_samples::Int64, max_spins::Int64, frame_duration_ms::Int64, kwargs::@kwargs{}) @ KomaMRIPlots ~/work/KomaMRI.jl/KomaMRI.jl/KomaMRIPlots/src/ui/DisplayFunctions.jl:1128 [2] top-level scope @ 03-ChemicalShiftEPI.md:20 [3] eval @ ./boot.jl:385 [inlined] [4] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [5] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [6] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [7] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, Base.PipeEndpoint, Base.PipeEndpoint})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [8] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [9] with_logger @ ./logging.jl:627 [inlined] [10] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [11] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/tutorial/04-3DSliceSelective.md:21-26 ```@example 04-3DSliceSelective obj = brain_phantom3D() obj.Δw .= 0 # Removes the off-resonance p1 = plot_phantom_map(obj, :T2 ; height=400) savefig(p1, "../assets/3-phantom.html") # hide ``` exception = UndefVarError: `ph` not defined Stacktrace: [1] plot_phantom_map(obj::Phantom{Float64}, key::Symbol; height::Int64, width::Nothing, darkmode::Bool, view_2d::Bool, colorbar::Bool, intermediate_time_samples::Int64, max_time_samples::Int64, max_spins::Int64, frame_duration_ms::Int64, kwargs::@kwargs{}) @ KomaMRIPlots ~/work/KomaMRI.jl/KomaMRI.jl/KomaMRIPlots/src/ui/DisplayFunctions.jl:1163 [2] top-level scope @ 04-3DSliceSelective.md:24 [3] eval @ ./boot.jl:385 [inlined] [4] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [5] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [6] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [7] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, Base.PipeEndpoint, Base.PipeEndpoint})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [8] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [9] with_logger @ ./logging.jl:627 [inlined] [10] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [11] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/tutorial/05-SimpleMotion.md:31-38 ```@example 05-SimpleMotion obj.motion = MotionList( Translate(2e-2, 0.0, 0.0, TimeRange(t_start=0.0, t_end=200e-3)) ) p1 = plot_phantom_map(obj, :T2 ; height=450, intermediate_time_samples=4) # hide savefig(p1, "../assets/5-phantom1.html") # hide ``` exception = UndefVarError: `ph` not defined Stacktrace: [1] plot_phantom_map(obj::Phantom{Float64}, key::Symbol; height::Int64, width::Nothing, darkmode::Bool, view_2d::Bool, colorbar::Bool, intermediate_time_samples::Int64, max_time_samples::Int64, max_spins::Int64, frame_duration_ms::Int64, kwargs::@kwargs{}) @ KomaMRIPlots ~/work/KomaMRI.jl/KomaMRI.jl/KomaMRIPlots/src/ui/DisplayFunctions.jl:1128 [2] top-level scope @ 05-SimpleMotion.md:35 [3] eval @ ./boot.jl:385 [inlined] [4] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [5] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [6] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [7] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, Base.PipeEndpoint, Base.PipeEndpoint})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [8] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [9] with_logger @ ./logging.jl:627 [inlined] [10] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [11] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation
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