Cannot precompile GDAL after an update of GEOS_jll from 3.9.0 to 3.10.0

[mathieu17g]

@visr I had an unsolicited upgrade of GEOS_jll from 3.9.0 to 3.10.0 which prevents current GDAL version to compile. Here is the error message below. Do you face the same issue ?

julia> using GDAL
ERROR: InitError: could not load library "/Users/Mathieu/.julia/artifacts/dce3145800aa7866bf5cdbedd3ac40850df3fc47/lib/libgdal.28.dylib"
dlopen(/Users/Mathieu/.julia/artifacts/dce3145800aa7866bf5cdbedd3ac40850df3fc47/lib/libgdal.28.dylib, 1): Library not loaded: @rpath/libgeos_c.1.dylib
  Referenced from: /Users/Mathieu/.julia/artifacts/dce3145800aa7866bf5cdbedd3ac40850df3fc47/lib/libgdal.28.dylib
  Reason: Incompatible library version: libgdal.28.dylib requires version 18.0.0 or later, but libgeos_c.1.16.0.dylib provides version 1.0.0
Stacktrace:
  [1] dlopen(s::String, flags::UInt32; throw_error::Bool)
    @ Base.Libc.Libdl ./libdl.jl:114
  [2] dlopen(s::String, flags::UInt32)
    @ Base.Libc.Libdl ./libdl.jl:114
  [3] macro expansion
    @ ~/.julia/packages/JLLWrappers/bkwIo/src/products/library_generators.jl:54 [inlined]
  [4] __init__()
    @ GDAL_jll ~/.julia/packages/GDAL_jll/WxCDm/src/wrappers/x86_64-apple-darwin.jl:110
  [5] _include_from_serialized(path::String, depmods::Vector{Any})
    @ Base ./loading.jl:696
  [6] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String)
    @ Base ./loading.jl:782
  [7] _tryrequire_from_serialized(modkey::Base.PkgId, build_id::UInt64, modpath::String)
    @ Base ./loading.jl:711
  [8] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String)
    @ Base ./loading.jl:771
  [9] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1020
 [10] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:936
 [11] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:923
 [12] eval
    @ ./boot.jl:360 [inlined]
 [13] eval
    @ ./Base.jl:39 [inlined]
 [14] repleval(m::Module, code::Expr, #unused#::String)
    @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.4.3/scripts/packages/VSCodeServer/src/repl.jl:157
 [15] (::VSCodeServer.var"#69#71"{Module, Expr, REPL.LineEditREPL, REPL.LineEdit.Prompt})()
    @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.4.3/scripts/packages/VSCodeServer/src/repl.jl:123
 [16] with_logstate(f::Function, logstate::Any)
    @ Base.CoreLogging ./logging.jl:491
 [17] with_logger
    @ ./logging.jl:603 [inlined]
 [18] (::VSCodeServer.var"#68#70"{Module, Expr, REPL.LineEditREPL, REPL.LineEdit.Prompt})()
    @ VSCodeServer ~/.vscode/extensions/julialang.language-julia-1.4.3/scripts/packages/VSCodeServer/src/repl.jl:124
 [19] #invokelatest#2
    @ ./essentials.jl:708 [inlined]
 [20] invokelatest(::Any)
    @ Base ./essentials.jl:706
 [21] macro expansion
    @ ~/.vscode/extensions/julialang.language-julia-1.4.3/scripts/packages/VSCodeServer/src/eval.jl:34 [inlined]
 [22] (::VSCodeServer.var"#53#54")()
    @ VSCodeServer ./task.jl:411
during initialization of module GDAL_jll

[visr]

Hmm yeah it looks like unfortunately JuliaPackaging/Yggdrasil#3834 broke the GDAL_jll for macOS and Windows: https://github.com/JuliaGeo/GDAL.jl/actions/runs/1407402966. (cc @jaakkor2)

Probably we have to pin the minor version of GEOS in the GDAL build. We already do this for PROJ: https://github.com/JuliaPackaging/Yggdrasil/blob/aa2ad28df953aa40eb59a8903e1ee0d63d0541da/G/GDAL/GDAL%40julia-1.6/build_tarballs.jl#L8-L14.

To avoid GEOS 3.10, you probably have to add [email protected] for now.

libgdal.28.dylib requires version 18.0.0 or later, but libgeos_c.1.16.0.dylib provides version 1.0.0

@giordano this seems strange right? As I correct that in in principle a minor release should be safe without pinning? Also the numbers seem strange, 18 vs 1.16 vs 1. I see nothing mentioned in https://github.com/libgeos/geos/blob/main/NEWS. Or could it be due to the switch to CMake for the GEOS build?

[giordano]

Yeah, that changed the SONAME of the library, see for example: JuliaBinaryWrappers/GEOS_jll.jl@46bcbb7#diff-2a84e35074ab9c852eb3e5c4b62019ca420842a627a0d8d55c03cd26dd65151f. You need to fix this first in the registry.

[mathieu17g]

To avoid GEOS 3.10, you probably have to add [email protected] for now.

It seems that it as to momentarily to be also put in GDAL.jl/project.toml [deps] and [compat] for Pkg.test to work on ArchGDAL

[giordano]

It's easier to fix GDAL_jll in the registry, as I said above

[visr]

Thanks for the tip @giordano. I submitted JuliaRegistries/General#47879, hopefully this is right?