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Race condition when computing mean! of large arrays? #929

Closed
ali-ramadhan opened this issue May 26, 2021 · 6 comments · Fixed by #931
Closed

Race condition when computing mean! of large arrays? #929

ali-ramadhan opened this issue May 26, 2021 · 6 comments · Fixed by #931
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bug Something isn't working

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@ali-ramadhan
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Describe the bug

When calling mean! on a large array, it seems to return early as some entries of the result are still storing the sum while others are still zero. I expected it to return an array full of ones.

To reproduce

The Minimal Working Example (MWE) for this bug:

julia> using CUDA

julia> N = 512;

julia> a = ones(N, N, N) |> CuArray;


julia> A = zeros(1, 1, N) |> CuArray;

julia> mean!(A, a)
1×1×512 CuArray{Float64, 3}:
[:, :, 1] =
 262144.0

[:, :, 2] =
 262144.0

[:, :, 3] =
 262144.0

...

[:, :, 510] =
 0.0

[:, :, 511] =
 0.0

[:, :, 512] =
 0.0
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version = "0.5.0"

[[IntelOpenMP_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "d979e54b71da82f3a65b62553da4fc3d18c9004c"
uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0"
version = "2018.0.3+2"

[[InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"

[[Interpolations]]
deps = ["AxisAlgorithms", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"]
git-tree-sha1 = "1e0e51692a3a77f1eeb51bf741bdd0439ed210e7"
uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
version = "0.13.2"

[[IntervalSets]]
deps = ["Dates", "EllipsisNotation", "Statistics"]
git-tree-sha1 = "3cc368af3f110a767ac786560045dceddfc16758"
uuid = "8197267c-284f-5f27-9208-e0e47529a953"
version = "0.5.3"

[[Isoband]]
deps = ["isoband_jll"]
git-tree-sha1 = "f9b6d97355599074dc867318950adaa6f9946137"
uuid = "f1662d9f-8043-43de-a69a-05efc1cc6ff4"
version = "0.1.1"

[[IterTools]]
git-tree-sha1 = "05110a2ab1fc5f932622ffea2a003221f4782c18"
uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
version = "1.3.0"

[[IteratorInterfaceExtensions]]
git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"

[[JLD2]]
deps = ["DataStructures", "FileIO", "MacroTools", "Mmap", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"]
git-tree-sha1 = "c50e77bb661b0e5aea126404246b07c7937691c5"
uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
version = "0.4.5"

[[JLLWrappers]]
git-tree-sha1 = "a431f5f2ca3f4feef3bd7a5e94b8b8d4f2f647a0"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.2.0"

[[JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"]
git-tree-sha1 = "81690084b6198a2e1da36fcfda16eeca9f9f24e4"
uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
version = "0.21.1"

[[JuliaInterpreter]]
deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"]
git-tree-sha1 = "ccc489088d6bc4b5265e043e3fbb1baad5025cf7"
uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a"
version = "0.8.11"

[[KernelDensity]]
deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"]
git-tree-sha1 = "591e8dc09ad18386189610acafb970032c519707"
uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b"
version = "0.6.3"

[[LAME_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "df381151e871f41ee86cee4f5f6fd598b8a68826"
uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d"
version = "3.100.0+3"

[[LLVM]]
deps = ["CEnum", "Libdl", "Printf", "Unicode"]
git-tree-sha1 = "b499c68a45249b0385585c62f4a9b62b5db8e691"
uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
version = "3.7.1"

[[LZO_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "f128cd6cd05ffd6d3df0523ed99b90ff6f9b349a"
uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
version = "2.10.0+3"

[[LazyArtifacts]]
deps = ["Artifacts", "Pkg"]
uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"

[[LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"

[[LibCURL_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"

[[LibGit2]]
deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"

[[LibSSH2_jll]]
deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"

[[LibVPX_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "85fcc80c3052be96619affa2fe2e6d2da3908e11"
uuid = "dd192d2f-8180-539f-9fb4-cc70b1dcf69a"
version = "1.9.0+1"

[[Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"

[[Libffi_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "761a393aeccd6aa92ec3515e428c26bf99575b3b"
uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490"
version = "3.2.2+0"

[[Libgcrypt_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"]
git-tree-sha1 = "b391a18ab1170a2e568f9fb8d83bc7c780cb9999"
uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4"
version = "1.8.5+4"

[[Libgpg_error_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "ec7f2e8ad5c9fa99fc773376cdbc86d9a5a23cb7"
uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8"
version = "1.36.0+3"

[[Libiconv_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "8e924324b2e9275a51407a4e06deb3455b1e359f"
uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
version = "1.16.0+7"

[[Libmount_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73"
uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
version = "2.35.0+0"

[[Libuuid_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066"
uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700"
version = "2.36.0+0"

[[LinearAlgebra]]
deps = ["Libdl"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"

[[LogExpFunctions]]
deps = ["DocStringExtensions", "LinearAlgebra"]
git-tree-sha1 = "1ba664552f1ef15325e68dc4c05c3ef8c2d5d885"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.2.4"

[[Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"

[[LoweredCodeUtils]]
deps = ["JuliaInterpreter"]
git-tree-sha1 = "8c96709706ce27471655247ad9a931447d16dd62"
uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b"
version = "1.2.9"

[[MKL_jll]]
deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
git-tree-sha1 = "c253236b0ed414624b083e6b72bfe891fbd2c7af"
uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
version = "2021.1.1+1"

[[MacroTools]]
deps = ["Markdown", "Random"]
git-tree-sha1 = "6a8a2a625ab0dea913aba95c11370589e0239ff0"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.6"

[[Makie]]
deps = ["Animations", "Artifacts", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Distributions", "DocStringExtensions", "FFMPEG", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "IntervalSets", "Isoband", "KernelDensity", "LinearAlgebra", "Markdown", "Match", "Observables", "Packing", "PlotUtils", "PolygonOps", "Printf", "Random", "Serialization", "Showoff", "SignedDistanceFields", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "UnicodeFun"]
git-tree-sha1 = "c4081bb56ef6546763c7b4662acf4e47e43149db"
uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
version = "0.13.0"

[[MappedArrays]]
git-tree-sha1 = "18d3584eebc861e311a552cbb67723af8edff5de"
uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900"
version = "0.4.0"

[[Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"

[[Match]]
git-tree-sha1 = "5cf525d97caf86d29307150fcba763a64eaa9cbe"
uuid = "7eb4fadd-790c-5f42-8a69-bfa0b872bfbf"
version = "1.1.0"

[[MbedTLS]]
deps = ["Dates", "MbedTLS_jll", "Random", "Sockets"]
git-tree-sha1 = "1c38e51c3d08ef2278062ebceade0e46cefc96fe"
uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
version = "1.0.3"

[[MbedTLS_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"

[[Memoization]]
deps = ["MacroTools"]
git-tree-sha1 = "7b8610852185715907835e02ad15d769c852ffc3"
uuid = "6fafb56a-5788-4b4e-91ca-c0cea6611c73"
version = "0.1.8"

[[Missings]]
deps = ["DataAPI"]
git-tree-sha1 = "4ea90bd5d3985ae1f9a908bd4500ae88921c5ce7"
uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
version = "1.0.0"

[[Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"

[[Mocking]]
deps = ["ExprTools"]
git-tree-sha1 = "916b850daad0d46b8c71f65f719c49957e9513ed"
uuid = "78c3b35d-d492-501b-9361-3d52fe80e533"
version = "0.7.1"

[[MosaicViews]]
deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"]
git-tree-sha1 = "b34e3bc3ca7c94914418637cb10cc4d1d80d877d"
uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389"
version = "0.3.3"

[[MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"

[[NaNMath]]
git-tree-sha1 = "bfe47e760d60b82b66b61d2d44128b62e3a369fb"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "0.3.5"

[[Netpbm]]
deps = ["FileIO", "ImageCore"]
git-tree-sha1 = "18efc06f6ec36a8b801b23f076e3c6ac7c3bf153"
uuid = "f09324ee-3d7c-5217-9330-fc30815ba969"
version = "1.0.2"

[[NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"

[[Observables]]
git-tree-sha1 = "fe29afdef3d0c4a8286128d4e45cc50621b1e43d"
uuid = "510215fc-4207-5dde-b226-833fc4488ee2"
version = "0.4.0"

[[OffsetArrays]]
deps = ["Adapt"]
git-tree-sha1 = "47b443d2ccc8297a4c538f55f8fd828ad58599ab"
uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
version = "1.8.0"

[[Ogg_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "a42c0f138b9ebe8b58eba2271c5053773bde52d0"
uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051"
version = "1.3.4+2"

[[OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "71bbbc616a1d710879f5a1021bcba65ffba6ce58"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "1.1.1+6"

[[OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "b9b8b8ed236998f91143938a760c2112dceeb2b4"
uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
version = "0.5.4+0"

[[Opus_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "f9d57f4126c39565e05a2b0264df99f497fc6f37"
uuid = "91d4177d-7536-5919-b921-800302f37372"
version = "1.3.1+3"

[[OrderedCollections]]
git-tree-sha1 = "4fa2ba51070ec13fcc7517db714445b4ab986bdf"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.4.0"

[[PCRE_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "b2a7af664e098055a7529ad1a900ded962bca488"
uuid = "2f80f16e-611a-54ab-bc61-aa92de5b98fc"
version = "8.44.0+0"

[[PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "f82a0e71f222199de8e9eb9a09977bd0767d52a0"
uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
version = "0.11.0"

[[PNGFiles]]
deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"]
git-tree-sha1 = "520e28d4026d16dcf7b8c8140a3041f0e20a9ca8"
uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883"
version = "0.3.7"

[[Packing]]
deps = ["GeometryBasics"]
git-tree-sha1 = "f4049d379326c2c7aa875c702ad19346ecb2b004"
uuid = "19eb6ba3-879d-56ad-ad62-d5c202156566"
version = "0.4.1"

[[PaddedViews]]
deps = ["OffsetArrays"]
git-tree-sha1 = "0fa5e78929aebc3f6b56e1a88cf505bb00a354c4"
uuid = "5432bcbf-9aad-5242-b902-cca2824c8663"
version = "0.5.8"

[[Pango_jll]]
deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "9a336dee51d20d1ed890c4a8dca636e86e2b76ca"
uuid = "36c8627f-9965-5494-a995-c6b170f724f3"
version = "1.42.4+10"

[[Parsers]]
deps = ["Dates"]
git-tree-sha1 = "c8abc88faa3f7a3950832ac5d6e690881590d6dc"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "1.1.0"

[[Pixman_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "6a20a83c1ae86416f0a5de605eaea08a552844a3"
uuid = "30392449-352a-5448-841d-b1acce4e97dc"
version = "0.40.0+0"

[[Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"

[[PlotUtils]]
deps = ["ColorSchemes", "Colors", "Dates", "Printf", "Random", "Reexport", "Statistics"]
git-tree-sha1 = "ae9a295ac761f64d8c2ec7f9f24d21eb4ffba34d"
uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043"
version = "1.0.10"

[[PolygonOps]]
git-tree-sha1 = "c031d2332c9a8e1c90eca239385815dc271abb22"
uuid = "647866c9-e3ac-4575-94e7-e3d426903924"
version = "0.1.1"

[[Preferences]]
deps = ["TOML"]
git-tree-sha1 = "00cfd92944ca9c760982747e9a1d0d5d86ab1e5a"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.2.2"

[[Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"

[[PyCall]]
deps = ["Conda", "Dates", "Libdl", "LinearAlgebra", "MacroTools", "Serialization", "VersionParsing"]
git-tree-sha1 = "169bb8ea6b1b143c5cf57df6d34d022a7b60c6db"
uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
version = "1.92.3"

[[QuadGK]]
deps = ["DataStructures", "LinearAlgebra"]
git-tree-sha1 = "12fbe86da16df6679be7521dfb39fbc861e1dc7b"
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
version = "2.4.1"

[[REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"

[[Random]]
deps = ["Serialization"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"

[[Random123]]
deps = ["Libdl", "Random", "RandomNumbers"]
git-tree-sha1 = "7c6710c8198fd4444b5eb6a3840b7d47bd3593c5"
uuid = "74087812-796a-5b5d-8853-05524746bad3"
version = "1.3.1"

[[RandomNumbers]]
deps = ["Random", "Requires"]
git-tree-sha1 = "441e6fc35597524ada7f85e13df1f4e10137d16f"
uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143"
version = "1.4.0"

[[Ratios]]
git-tree-sha1 = "37d210f612d70f3f7d57d488cb3b6eff56ad4e41"
uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439"
version = "0.4.0"

[[RecipesBase]]
git-tree-sha1 = "b3fb709f3c97bfc6e948be68beeecb55a0b340ae"
uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
version = "1.1.1"

[[Reexport]]
git-tree-sha1 = "57d8440b0c7d98fc4f889e478e80f268d534c9d5"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "1.0.0"

[[Requires]]
deps = ["UUIDs"]
git-tree-sha1 = "4036a3bd08ac7e968e27c203d45f5fff15020621"
uuid = "ae029012-a4dd-5104-9daa-d747884805df"
version = "1.1.3"

[[Revise]]
deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "Pkg", "REPL", "Requires", "UUIDs", "Unicode"]
git-tree-sha1 = "b72fa706920b1421d581525de9f4e442b95ba254"
uuid = "295af30f-e4ad-537b-8983-00126c2a3abe"
version = "3.1.14"

[[Rmath]]
deps = ["Random", "Rmath_jll"]
git-tree-sha1 = "bf3188feca147ce108c76ad82c2792c57abe7b1f"
uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
version = "0.7.0"

[[Rmath_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "68db32dff12bb6127bac73c209881191bf0efbb7"
uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
version = "0.3.0+0"

[[SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"

[[Scratch]]
deps = ["Dates"]
git-tree-sha1 = "ad4b278adb62d185bbcb6864dc24959ab0627bf6"
uuid = "6c6a2e73-6563-6170-7368-637461726353"
version = "1.0.3"

[[Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"

[[SharedArrays]]
deps = ["Distributed", "Mmap", "Random", "Serialization"]
uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"

[[Showoff]]
deps = ["Dates", "Grisu"]
git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de"
uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f"
version = "1.0.3"

[[SignedDistanceFields]]
deps = ["Random", "Statistics", "Test"]
git-tree-sha1 = "d263a08ec505853a5ff1c1ebde2070419e3f28e9"
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[[Sockets]]
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[[SortingAlgorithms]]
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[[SparseArrays]]
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[[StackViews]]
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[[Static]]
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[[StaticArrays]]
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[[Statistics]]
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[[StatsAPI]]
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[[StatsBase]]
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[[StatsFuns]]
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[[StructArrays]]
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[[SuiteSparse]]
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[[TOML]]
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uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"

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[[Tar]]
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[[TensorCore]]
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[[Test]]
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uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[[TimeZones]]
deps = ["Dates", "EzXML", "Mocking", "Pkg", "Printf", "RecipesBase", "Serialization", "Unicode"]
git-tree-sha1 = "4ba8a9579a243400db412b50300cd61d7447e583"
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[[TimerOutputs]]
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[[TimesDates]]
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[[TranscodingStreams]]
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[[URIs]]
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version = "1.3.0"

[[UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"

[[Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"

[[UnicodeFun]]
deps = ["REPL"]
git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf"
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[[VersionParsing]]
git-tree-sha1 = "80229be1f670524750d905f8fc8148e5a8c4537f"
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[[WoodburyMatrices]]
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[[XML2_jll]]
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git-tree-sha1 = "afd2b541e8fd425cd3b7aa55932a257035ab4a70"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.9.11+0"

[[XSLT_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Pkg", "XML2_jll"]
git-tree-sha1 = "2b3eac39df218762d2d005702d601cd44c997497"
uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
version = "1.1.33+4"

[[Xorg_libX11_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527"
uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc"
version = "1.6.9+4"

[[Xorg_libXau_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e"
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[[Xorg_libXdmcp_jll]]
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[[Xorg_libXext_jll]]
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[[Xorg_libXrender_jll]]
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[[Xorg_libxcb_jll]]
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git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6"
uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b"
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[[Xorg_xtrans_jll]]
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git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845"
uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
version = "1.4.0+3"

[[Zlib_jll]]
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uuid = "83775a58-1f1d-513f-b197-d71354ab007a"

[[isoband_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "a1ac99674715995a536bbce674b068ec1b7d893d"
uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4"
version = "0.2.2+0"

[[libass_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "acc685bcf777b2202a904cdcb49ad34c2fa1880c"
uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0"
version = "0.14.0+4"

[[libfdk_aac_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "7a5780a0d9c6864184b3a2eeeb833a0c871f00ab"
uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
version = "0.1.6+4"

[[libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "6abbc424248097d69c0c87ba50fcb0753f93e0ee"
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version = "1.6.37+6"

[[libvorbis_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
git-tree-sha1 = "fa14ac25af7a4b8a7f61b287a124df7aab601bcd"
uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
version = "1.3.6+6"

[[nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"

[[p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"

[[x264_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "d713c1ce4deac133e3334ee12f4adff07f81778f"
uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
version = "2020.7.14+2"

[[x265_jll]]
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git-tree-sha1 = "487da2f8f2f0c8ee0e83f39d13037d6bbf0a45ab"
uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
version = "3.0.0+3"

Version info

Details on Julia:

julia> versioninfo()
Julia Version 1.6.1
Commit 6aaedecc44 (2021-04-23 05:59 UTC)
Platform Info:
  OS: Linux (x86_64-pc-linux-gnu)
  CPU: Intel(R) Xeon(R) Silver 4214 CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-11.0.1 (ORCJIT, cascadelake)

Details on CUDA:

julia> CUDA.versioninfo()
CUDA toolkit 10.2.89, artifact installation
CUDA driver 10.2.0
NVIDIA driver 440.33.1

Libraries: 
- CUBLAS: 10.2.2
- CURAND: 10.1.2
- CUFFT: 10.1.2
- CUSOLVER: 10.3.0
- CUSPARSE: 10.3.1
- CUPTI: 12.0.0
- NVML: 10.0.0+440.33.1
- CUDNN: 8.20.0 (for CUDA 10.2.0)
- CUTENSOR: 1.3.0 (for CUDA 10.2.0)

Toolchain:
- Julia: 1.6.1
- LLVM: 11.0.1
- PTX ISA support: 3.2, 4.0, 4.1, 4.2, 4.3, 5.0, 6.0, 6.1, 6.3, 6.4, 6.5
- Device capability support: sm_30, sm_32, sm_35, sm_37, sm_50, sm_52, sm_53, sm_60, sm_61, sm_62, sm_70, sm_72, sm_75

4 devices:
  0: TITAN V (sm_70, 4.661 GiB / 11.784 GiB available)
  1: TITAN V (sm_70, 11.771 GiB / 11.784 GiB available)
  2: TITAN V (sm_70, 10.137 GiB / 11.784 GiB available)
  3: TITAN V (sm_70, 9.928 GiB / 11.784 GiB available)

Additional context

X-Ref: CliMA/LESbrary.jl#118

@ali-ramadhan
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The fact that using CUDA.@sync makes the MWE work made me think it might be a race condition:

julia> using Statistics

julia> using CUDA

julia> N = 512;

julia> a = ones(N, N, N) |> CuArray;

julia> A = zeros(1, 1, N) |> CuArray;

julia> CUDA.@sync mean!(A, a)
1×1×512 CuArray{Float64, 3}:
[:, :, 1] =
 1.0

[:, :, 2] =
 1.0

[:, :, 3] =
 1.0

...

[:, :, 510] =
 1.0

[:, :, 511] =
 1.0

[:, :, 512] =
 1.0

ali-ramadhan added a commit to CliMA/Oceananigans.jl that referenced this issue May 26, 2021
@maleadt
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maleadt commented May 27, 2021

Does this reproduce outside of the REPL? See #837; the REPL evaluates output on a different task, and we should already synchronize automatically there.

EDIT: never mind, another silly mistake. Fix incoming.

@ali-ramadhan
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Thanks @maleadt! Didn't realize this was a REPL issue.

We're experiencing some bad output in CliMA/LESbrary.jl#118 where we're computing mean! of some large CuArrays and writing them to disk but when reading data from the file and plotting it, it seems like the mean wasn't computed properly (some array elements contain the sum and others seem to contain zero) so I thought this issue was relevant.

I'll try to reproduce outside of the REPL and open a new issue if we can reproduce with just CUDA.jl.

@maleadt
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maleadt commented May 27, 2021

With the REPL fixed you should be able to investigate from there again (presumably that's a little easier, too).

@ali-ramadhan
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ali-ramadhan commented May 27, 2021

I don't fully understand the PR but could #933 be related or help?

@maleadt
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maleadt commented May 28, 2021

Nope, that only affects that specific NVML method, which CI calls (and hence it fixes a CI issue).

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2 participants