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JuliaDataCubes · Aug 29, 2024 · 3ce7244 · 3ce7244
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@@ -1 +1 @@
-9de8ff0f
+1296afe7
diff --git a/exercise_timeseries.html b/exercise_timeseries.html
@@ -29,6 +29,71 @@
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@@ -351,6 +416,7 @@ <h1>Dataset</h1>
 
 </section>
 
+<section>
 <section id="possible-time-series-analyses" class="title-slide slide level1 center">
 <h1>Possible time series analyses</h1>
 <ul>
@@ -362,10 +428,55 @@ <h1>Possible time series analyses</h1>
 <li>RQA</li>
 <li>Histogram per decade</li>
 </ul>
+<div class="sourceCode" id="cb1"><pre class="sourceCode numberSource julia number-lines code-with-copy"><code class="sourceCode julia"><span id="cb1-1"><a></a><span class="co"># Data loading</span></span>
+<span id="cb1-2"><a></a><span class="im">using</span> <span class="bu">DataFrames</span></span>
+<span id="cb1-3"><a></a><span class="im">using</span> <span class="bu">CSV</span></span>
+<span id="cb1-4"><a></a>jena <span class="op">=</span> CSV.<span class="fu">read</span>(<span class="st">"examples/data/jena.csv"</span>, DataFrame)</span>
+<span id="cb1-5"><a></a>t2mmints <span class="op">=</span> jena[!, <span class="op">:</span>Variable_t2mmin]</span>
+<span id="cb1-6"><a></a>datets <span class="op">=</span> jena[!, <span class="op">:</span>]</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </section>
-
+<section id="mean-seasonal-cycle" class="slide level2">
+<h2>Mean seasonal cycle</h2>
+<div class="sourceCode" id="cb2"><pre class="sourceCode numberSource julia number-lines code-with-copy"><code class="sourceCode julia"><span id="cb2-1"><a></a><span class="kw">function</span> <span class="fu">yearhistsview</span>(ts, dates)</span>
+<span id="cb2-2"><a></a>    years <span class="op">=</span> <span class="fu">unique</span>(<span class="fu">year</span>.(jena.Ti))</span>
+<span id="cb2-3"><a></a>    yearbins <span class="op">=</span> []</span>
+<span id="cb2-4"><a></a>    <span class="cf">for</span> y <span class="kw">in</span> years </span>
+<span id="cb2-5"><a></a>        ybegin <span class="op">=</span> <span class="fu">findfirst</span>(<span class="fu">x-&gt;year</span>(x)<span class="op">==</span>y, dates)</span>
+<span id="cb2-6"><a></a>        ylast <span class="op">=</span> <span class="fu">findlast</span>(x<span class="op">-&gt;</span> <span class="fu">year</span>(x)<span class="op">==</span>y, dates)</span>
+<span id="cb2-7"><a></a>        ydata <span class="op">=</span> <span class="fu">view</span>(ts,ybegin<span class="op">:</span>ylast)</span>
+<span id="cb2-8"><a></a>        <span class="fu">push!</span>(yearbins, ydata)</span>
+<span id="cb2-9"><a></a>    <span class="cf">end</span></span>
+<span id="cb2-10"><a></a><span class="kw">end</span></span>
+<span id="cb2-11"><a></a></span>
+<span id="cb2-12"><a></a>yearbins <span class="op">=</span> <span class="fu">yearhist</span>(jena.Variable_t2m, jena.Ti)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<div class="sourceCode" id="cb3"><pre class="sourceCode numberSource julia number-lines code-with-copy"><code class="sourceCode julia"><span id="cb3-1"><a></a>dts_clim <span class="op">=</span> <span class="fu">DateTime</span>(<span class="fl">2020</span>, <span class="fl">1</span>, <span class="fl">1</span>, <span class="fl">0</span>)<span class="op">:</span><span class="fu">Day</span>(<span class="fl">1</span>)<span class="op">:</span><span class="fu">DateTime</span>(<span class="fl">2020</span>, <span class="fl">12</span>, <span class="fl">31</span>, <span class="fl">23</span>)</span>
+<span id="cb3-2"><a></a></span>
+<span id="cb3-3"><a></a>t2m_clim <span class="op">=</span> <span class="fu">zeros</span>(<span class="fu">length</span>(dts_clim))</span>
+<span id="cb3-4"><a></a></span>
+<span id="cb3-5"><a></a><span class="pp">@time</span> <span class="cf">begin</span></span>
+<span id="cb3-6"><a></a></span>
+<span id="cb3-7"><a></a><span class="cf">for</span> (i, dt) <span class="kw">in</span> <span class="fu">enumerate</span>(dts_clim)</span>
+<span id="cb3-8"><a></a></span>
+<span id="cb3-9"><a></a>    t2m_clim[i] <span class="op">=</span> <span class="fu">mean</span>(<span class="fu">view</span>(t2m_jena, <span class="fu">dayofyear</span>(dt) <span class="op">.==</span> <span class="fu">dayofyear</span>.(dts_jena)))</span>
+<span id="cb3-10"><a></a></span>
+<span id="cb3-11"><a></a><span class="cf">end</span></span>
+<span id="cb3-12"><a></a></span>
+<span id="cb3-13"><a></a><span class="cf">end</span></span>
+<span id="cb3-14"><a></a></span>
+<span id="cb3-15"><a></a><span class="pp">@time</span> <span class="cf">begin</span></span>
+<span id="cb3-16"><a></a></span>
+<span id="cb3-17"><a></a><span class="cf">for</span> (i, dt) <span class="kw">in</span> <span class="fu">enumerate</span>(dts_clim)</span>
+<span id="cb3-18"><a></a></span>
+<span id="cb3-19"><a></a>    t2m_clim[i] <span class="op">=</span> <span class="fu">mean</span>(<span class="fu">view</span>(t2m_jena, <span class="fu">dayofyear</span>(dt) <span class="op">.==</span> <span class="fu">dayofyear</span>.(dts_jena)))</span>
+<span id="cb3-20"><a></a></span>
+<span id="cb3-21"><a></a><span class="cf">end</span></span>
+<span id="cb3-22"><a></a></span>
+<span id="cb3-23"><a></a><span class="cf">end</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+</section></section>
 <section id="plotting" class="title-slide slide level1 center">
 <h1>Plotting</h1>
+<div class="sourceCode" id="cb4"><pre class="sourceCode numberSource julia number-lines code-with-copy"><code class="sourceCode julia"><span id="cb4-1"><a></a><span class="im">using</span> <span class="bu">GLMakie</span></span>
+<span id="cb4-2"><a></a><span class="fu">plot</span>(jena.Ti, t2mmints)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 
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diff --git a/exercise_yaxarrays.html b/exercise_yaxarrays.html
@@ -425,18 +425,10 @@ <h2>Dataset download</h2>
 <div id="2" class="cell" data-execution_count="0">
 <div class="sourceCode cell-code" id="cb1"><pre class="sourceCode numberSource julia number-lines code-with-copy"><code class="sourceCode julia"><span id="cb1-1"><a></a><span class="im">using</span> <span class="bu">YAXArrays</span></span>
 <span id="cb1-2"><a></a><span class="im">using</span> <span class="bu">Zarr</span></span>
-<span id="cb1-3"><a></a><span class="im">using</span> <span class="bu">DiskArrays</span></span>
-<span id="cb1-4"><a></a><span class="im">using</span> <span class="bu">DimensionalData</span></span>
-<span id="cb1-5"><a></a>era5url <span class="op">=</span> <span class="st">"https://s3.bgc-jena.mpg.de:9000/deepextremes/v3/ERA5Cube.zarr"</span></span>
-<span id="cb1-6"><a></a>era5 <span class="op">=</span> <span class="fu">Cube</span>(era5url)</span>
-<span id="cb1-7"><a></a>timedim <span class="op">=</span> <span class="fu">dimnum</span>(era5, Ti)</span>
-<span id="cb1-8"><a></a>chunkinds <span class="op">=</span><span class="fu">ones</span>(<span class="dt">Int64</span>, <span class="fu">length</span>(<span class="fu">size</span>(era5)))</span>
-<span id="cb1-9"><a></a>chunks <span class="op">=</span> <span class="fu">eachchunk</span>(era5)</span>
-<span id="cb1-10"><a></a>chunkinds[timedim] <span class="op">=</span> <span class="fu">size</span>(chunks, timedim)<span class="op">-</span><span class="fl">1</span></span>
-<span id="cb1-11"><a></a>lastchunk <span class="op">=</span> chunks[chunkinds<span class="op">...</span>]</span>
-<span id="cb1-12"><a></a>timestart <span class="op">=</span> <span class="fu">first</span>(<span class="fu">dims</span>(era5,Ti)[lastchunk[timedim]])</span>
-<span id="cb1-13"><a></a>timeend <span class="op">=</span> <span class="fu">last</span>(<span class="fu">dims</span>(era5,Ti))</span>
-<span id="cb1-14"><a></a>sub <span class="op">=</span> era5[Ti<span class="op">=</span>timestart<span class="op">..</span>timeend, longitude<span class="op">=</span><span class="fl">0</span><span class="op">..</span><span class="fl">14.76</span>,latitude<span class="op">=</span><span class="fl">30.1</span><span class="op">..</span><span class="fl">60</span>]</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<span id="cb1-3"><a></a>era5url <span class="op">=</span> <span class="st">"https://s3.bgc-jena.mpg.de:9000/deepextremes/v3/ERA5Cube.zarr"</span></span>
+<span id="cb1-4"><a></a>ds <span class="op">=</span> <span class="fu">open_dataset</span>(era5url)</span>
+<span id="cb1-5"><a></a>sub <span class="op">=</span> ds[Ti<span class="op">=</span><span class="fu">DateTime</span>(<span class="fl">1998</span>,<span class="fl">1</span>,<span class="fl">1</span>)<span class="op">..</span><span class="fu">DateTime</span>(<span class="fl">2022</span>,<span class="fl">12</span>,<span class="fl">31</span>), longitude<span class="op">=</span><span class="fl">0</span><span class="op">..</span><span class="fl">14.76</span>,latitude<span class="op">=</span><span class="fl">30.1</span><span class="op">..</span><span class="fl">60</span>]</span>
+<span id="cb1-6"><a></a><span class="fu">savedataset</span>(sub,path<span class="op">=</span><span class="st">"./era5.zarr"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
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