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Out of convenience, MLJLM defines residuals as$X\theta - y$ , however the literature typically does the opposite. This matters only if the loss is asymmetrical which is the case for the pinball loss used in the quantile regression. The report in #147 exposed this.
Note that the report in #147 also compared the performance of an IP method with the result obtained by MLJLM. The objective achieved using MLJLM is about 9% worse than that from the IP method. When using a non-IP method from the quantreg package, the objective function is 1-2% better. This is not worrying per se, in the case presented LBFGS just stops at a non-optimal point, likely gets stuck in a very flat zone.