trying auto build

.github/workflows/build-site.yml

@@ -2,6 +2,7 @@ name: Build Site
 on:
   push:
     branches: ["master"]
+  workflow_dispatch: 
 
 jobs:
   build-docs:
@@ -20,6 +21,14 @@ jobs:
         run: Rscript -e 'renv::install("reticulate")'
       - name: Set up quarto
         uses: quarto-dev/quarto-actions/setup@v2
+      - name: Build Research pages
+        run: |
+          python make_research_qmd.py --zotero_key  ${{ secrets.ZOTERO_KEY }}
+          git config user.name 'bot'
+          git config user.email '...'
+          git add research/papers/*
+          git commit -m "gh workflow build [skip actions]"
+          git push
       - name: Render and publish to gh pages
         uses: quarto-dev/quarto-actions/publish@v2
         with:

make_research_qmd.py

@@ -0,0 +1,55 @@
+from pyzotero import zotero
+from zotero2qmd.zotero2qmd import item2main, main2qmd, filter_pubs
+from collections import Counter
+import re
+import yaml
+from pathlib import Path
+import click
+
+
+def make_file_names(all_mains):
+    first_aut = [x["author"][0]["name"]["family"] for x in all_mains]
+    years = [x["date"].split("-")[0] for x in all_mains]
+    keys = [x["params"]["key"] for x in all_mains]
+
+    all_stem = [f"{aut}_{year}_{key}" for aut, year, key in zip(first_aut, years, keys)]
+
+    all_stem = [re.sub(r"_$", "", x) for x in all_stem]
+    return all_stem
+
+@click.command()
+@click.option(
+    '--zotero_key',
+    default = ".zotero"
+)
+def zotero_qmd(
+    zotero_key
+):
+    if zotero_key == ".zotero":
+        keypath = Path(".zotero")
+        with keypath.open() as keyfile:
+            zotero_key = keyfile.readline().strip()
+
+    zot = zotero.Zotero(
+        library_id='7642731', 
+        library_type='user', 
+        api_key=zotero_key
+    ) 
+
+    pubs = zot.publications()
+
+    filtered_pubs = filter_pubs(pubs)
+    all_mains = [item2main(x) for x in filtered_pubs]
+    all_stems = make_file_names(all_mains)
+    out_path = Path("research","papers")
+
+    for stem, item in zip(all_stems, all_mains):
+        out_file = out_path.joinpath(stem).with_suffix(".qmd")
+        if not out_file.exists():
+            with out_file.open(mode = "w"):
+                qmd_string = "---\n"+yaml.dump(item)+"\n---"
+                out_file.write_text(qmd_string)
+
+
+if __name__ == "__main__":
+    zotero_qmd()