Merge pull request #16 from JoFrhwld/software-page

Software page
JoFrhwld · Dec 15, 2023 · 38f8922 · 38f8922
2 parents 2992acf + 0e424e5
commit 38f8922
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diff --git a/_extensions/jofrhwld/codeblocklabel/_extension.yml b/_extensions/jofrhwld/codeblocklabel/_extension.yml
@@ -0,0 +1,8 @@
+title: Codeblocklabel
+author: Josef Fruehwald
+version: 1.0.0
+quarto-required: ">=1.3.0"
+contributes:
+  filters:
+    - codeblocklabel.lua
+
diff --git a/_extensions/jofrhwld/codeblocklabel/codeblocklabel.css b/_extensions/jofrhwld/codeblocklabel/codeblocklabel.css
@@ -0,0 +1,10 @@
+.langname {
+    margin-bottom: 0%;
+    padding-bottom: 0%;
+    font-style: italic;
+    font-size:smaller;
+}
+
+.sourceCode[id]{
+    margin-top: 0%;
+}
diff --git a/_extensions/jofrhwld/codeblocklabel/codeblocklabel.lua b/_extensions/jofrhwld/codeblocklabel/codeblocklabel.lua
@@ -0,0 +1,30 @@
+
+-- function Div(el)
+--   if el.content[1].t == "CodeBlock" then
+--     return pandoc.Para("CodeBlock!")
+--   end 
+-- end
+
+quarto.doc.add_html_dependency({
+    name = 'codenamelabel',
+    stylesheets = {'codeblocklabel.css'}
+  })
+
+function CodeBlock(block)
+  local newblock = block
+  if (FORMAT:match "html") and 
+     (block.classes[1]) then
+    local langname = block.classes[1]
+    out = {pandoc.Div(
+      pandoc.RawInline("html",
+        "<pre class='langname'>"..block.classes[1].."</pre>"
+      ),
+      pandoc.Attr("", {"langname"}, {})
+    ), 
+      newblock
+    }
+     else
+      out = newblock
+  end
+  return out
+end
diff --git a/_quarto.yml b/_quarto.yml
@@ -5,10 +5,15 @@ project:
     - teaching
     #- papers
   render:
-    - "*.qmd"
+    - "*qmd"
+    - "*ipynb"
     - "!papers/*/*qmd"
     - "!teaching/courses/2022_lin517/src"
-    - "!*/skeleton"
+    - "!**/*_files/"
+
+filters:
+    - codeblocklabel
+
 website:
   google-analytics: 
     tracking-id: "G-C00S3NPL7B"
@@ -22,8 +27,20 @@ website:
         text: Home
       - href: research/index.qmd
         text: Research
+      - href: software/index.qmd
+        text: Software
       - href: teaching/index.qmd
         text: Teaching
+    right:
+      - href: https://jofrhwld.github.io/blog/
+        text: Blog
+        icon: newspaper
+      - href: https://bsky.app/profile/jofrhwld.bsky.social
+        icon: clouds
+        text: bsky
+      - href: https://github.com/JoFrhwld
+        icon: github
+
 format:
   html:
     theme:
@@ -36,6 +53,7 @@ format:
         - styles/dark.scss
         - styles/styles.scss
     toc: true
+
 
 editor: visual
 
diff --git a/make_qmd.ipynb b/make_qmd.ipynb
@@ -5,13 +5,33 @@
    "metadata": {},
    "source": [
     "---\n",
-    "execute: false\n",
+    "title: \"Make research pages\"\n",
+    "execution:\n",
+    "    eval: false\n",
     "---"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "#| eval: false\n",
+    "! pip install pyzotero\n",
+    "! pip install git+https://github.com/JoFrhwld/zotero2qmd.git"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "`zoetero2qmd` is a quick and dirty package I wrote to convert the output from `pyzotero` to compatible data structures for quarto headers."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -23,24 +43,30 @@
     "from pathlib import Path"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "If you are reusing this code, you'll need to get your own API key: [pyzotero getting started](https://pyzotero.readthedocs.io/en/latest/#getting-started-short-version)"
+   ]
+  },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 3,
    "metadata": {},
    "outputs": [],
    "source": [
     "keypath = Path(\".zotero\")\n",
     "with keypath.open() as keyfile:\n",
-    "    key_text = keyfile.readline().strip()"
+    "    key_text = keyfile.readline().strip()\n",
+    "zot = zotero.Zotero(library_id='7642731', library_type='user', api_key=key_text)    "
    ]
   },
   {
-   "cell_type": "code",
-   "execution_count": 3,
+   "cell_type": "markdown",
    "metadata": {},
-   "outputs": [],
    "source": [
-    "zot = zotero.Zotero(library_id='7642731', library_type='user', api_key=key_text)"
+    "The `zotero.Zotero.publications()` method pulls down all citations you've added to \"My Publications\"."
    ]
   },
   {
@@ -53,48 +79,52 @@
    ]
   },
   {
-   "cell_type": "code",
-   "execution_count": 5,
+   "cell_type": "markdown",
    "metadata": {},
-   "outputs": [],
    "source": [
-    "filtered_pubs = filter_pubs(pubs)"
+    "Everything that isn't a talk is going into one big pile for now. I'll figure out what to do with talks later. Also, I don't know why I started using \"main\" to refer to the publication info."
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [],
    "source": [
+    "filtered_pubs = filter_pubs(pubs)\n",
     "all_mains = [item2main(x) for x in filtered_pubs]"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Each dictionary can be yaml dumped into valid quarto headings."
+   ]
+  },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 6,
    "metadata": {},
    "outputs": [
     {
      "data": {
       "text/plain": [
-       "{'params': {'key': 'M3E7A7LS', 'notes': ''},\n",
-       " 'author': [{'name': {'given': 'Ingrid', 'family': 'Rosenfelder'}},\n",
-       "  {'name': {'given': 'Josef', 'family': 'Fruehwald'}},\n",
-       "  {'name': {'given': 'Keelan', 'family': 'Evanini'}},\n",
-       "  {'name': {'given': 'Jiahong', 'family': 'Yuan'}}],\n",
-       " 'title': 'FAVE (Forced Alignment and Vowel Extraction) Program Suite.',\n",
-       " 'date': '2011',\n",
+       "{'params': {'key': 'BNWT43F9', 'notes': 'DOI: 10.5281/ZENODO.10212099'},\n",
+       " 'author': [{'name': {'given': 'Josef', 'family': 'Fruehwald'}},\n",
+       "  {'name': {'given': 'Santiago', 'family': 'Barreda'}}],\n",
+       " 'title': 'fasttrackpy',\n",
+       " 'date': '2023-11-28',\n",
        " 'date-format': 'YYYY',\n",
-       " 'description': 'v0.0.0',\n",
-       " 'abstract': '',\n",
+       " 'description': 'v0.3.0',\n",
+       " 'abstract': 'This is a python implementation of the FastTrack method.',\n",
        " 'citation': {'type': 'software',\n",
-       "  'issued': '2011',\n",
-       "  'url': 'http://fave.ling.upenn.edu/',\n",
-       "  'version': 'v0.0.0'}}"
+       "  'issued': '2023-11-28',\n",
+       "  'url': 'https://fasttrackiverse.github.io/fasttrackpy/',\n",
+       "  'version': 'v0.3.0'}}"
       ]
      },
-     "execution_count": 7,
+     "execution_count": 6,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -103,9 +133,16 @@
     "all_mains[0]"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "It took a bit of work to generate mostly legible but unique file names. I decided to append the Zotero `key` value to each."
+   ]
+  },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 7,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -122,65 +159,36 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": 8,
    "metadata": {},
    "outputs": [],
    "source": [
     "all_stems = make_file_names(all_mains)"
    ]
   },
   {
-   "cell_type": "code",
-   "execution_count": 10,
+   "cell_type": "markdown",
    "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/plain": [
-       "['Rosenfelder_2011_M3E7A7LS',\n",
-       " 'Rosenfelder_2015_K57PJ2RE',\n",
-       " 'Rosenfelder_2022_TRXWWXD2',\n",
-       " 'Fruehwald_2023_GY5I9QMZ',\n",
-       " 'Fruehwald_2019_URYFVWHE',\n",
-       " 'Tanner_2020_GH2LZM4Y',\n",
-       " 'Purse_2022_LIGPGR5R',\n",
-       " 'Mielke_2019_U5C56KNR',\n",
-       " 'Labov_2013_QZP9CAP8',\n",
-       " 'Fruehwald_2013_W28LR5KT',\n",
-       " 'Fruehwald_2011_LPQN5R3M',\n",
-       " 'Fruehwald_2022_H347UNLS',\n",
-       " 'Fruehwald_2017_ETG527QQ',\n",
-       " 'Fruehwald_2012_7HNEQZ7H',\n",
-       " 'Fruehwald_2008_IZLBZKZV',\n",
-       " 'Fruehwald_2007_MG8DFJEK',\n",
-       " 'Boyd_2021_733Q4MMI',\n",
-       " 'Fruehwald_2016_TCTQU8FS',\n",
-       " 'Wieling_2016_FU9RXCUV',\n",
-       " 'Sneller_2019_8ERVHBSG',\n",
-       " 'Fruehwald_2015_TJI9T9W6',\n",
-       " 'Fruehwald_2017_258NF56V',\n",
-       " 'Fruehwald_2016_34D4IRNY',\n",
-       " 'Fruehwald_2013_H3BZPAT7']"
-      ]
-     },
-     "execution_count": 10,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
    "source": [
-    "all_stems"
+    "I started dumping everything into \"papers\"... so now I'm stuck with it."
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 9,
    "metadata": {},
    "outputs": [],
    "source": [
     "out_path = Path(\"research\",\"papers\")"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "I only want to write new files, since I may manually edit the results here and there."
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": 10,
@@ -194,13 +202,6 @@
     "            qmd_string = \"---\\n\"+yaml.dump(item)+\"\\n---\"\n",
     "            out_file.write_text(qmd_string)"
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": []
   }
  ],
  "metadata": {