Features/#360, #433 PEPs configuration support#424

Merged

iromeo merged 31 commits intomasterfrom features/#360-PEPs-configuration-support

Oct 31, 2021

+2,512-182

Commits on Aug 16, 2021

Features/#360 PEPs configuration support

Kirill Golovin
authored and
Kirill Golovin
committed

Commits on Aug 17, 2021

feat: Add SmkPepObjectCompletionContributor

Kirill Golovin
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Kirill Golovin
committed
feat: Add falling test

Kirill Golovin
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Kirill Golovin
committed
feat: Add file project.py in MockPackages3

Kirill Golovin
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Kirill Golovin
committed
fix: Fixing resolve pep object

Kirill Golovin
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Kirill Golovin
committed
feat: Add tests to pepfile and pepschema keywords completion

Kirill Golovin
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Kirill Golovin
committed
fix: Fixed check token sequence for pep completion

Kirill Golovin
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Kirill Golovin
committed
feat: Add new tests for completion/resolve workflow sections

Kirill Golovin
authored and
Kirill Golovin
committed
Merge branch 'master' into features/#360 -PEPs-configuration-support

Kirill Golovin
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Kirill Golovin
committed
fix: post-merge fixes

Kirill Golovin
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Kirill Golovin
committed

Commits on Aug 18, 2021

feat: Add tests to pep and pep.{} completion/resolve/inspections

Kirill Golovin
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Kirill Golovin
committed
fix: Add new tests and fix old

Kirill Golovin
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Kirill Golovin
committed
fix: Rename PEP_SECTION to PEP_OBJECT

Kirill Golovin
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Kirill Golovin
committed
fix: Move peppy code in a separate place

Kirill Golovin
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Kirill Golovin
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refactor: SmkPepConfigType cosmetic

Kirill Golovin
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Kirill Golovin
committed
fix: Replacement of an expensive operation

Kirill Golovin
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Kirill Golovin
committed
fix: Add tests for the section onstart like a global section

Kirill Golovin
authored and
Kirill Golovin
committed
refactoring: cleanup
iromeo
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refactoring: 1) pep.<> completion/resolve re-implemented via type inference 2) pep specific global implicit vars extracted from snakemake global vars method 3) peppy version added
iromeo
committed

Commits on Aug 19, 2021

fix: Fix work of pep.config in bad cases also add tests

Kirill Golovin
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Kirill Golovin
committed
fix: Add correct behavior for pep.config with different kinds of yaml file

Kirill Golovin
authored and
Kirill Golovin
committed

Commits on Aug 20, 2021

fix: single reference API fixed for smk workflow args sections
iromeo
committed

Commits on Aug 23, 2021

fix: Fix tests to pep.config and make corresponding fixes

Kirill Golovin
authored and
Kirill Golovin
committed

Commits on Aug 24, 2021

feat: Add test for inspection pep.config.{missing_key}

Kirill Golovin
authored and
Kirill Golovin
committed

Commits on Aug 27, 2021

feat: Add pep.config[] feat, need to implement

Kirill Golovin
authored and
Kirill Golovin
committed