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Default path "config/config.yaml" not recognised #363

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iromeo opened this issue May 18, 2021 · 4 comments · Fixed by #377
Closed

Default path "config/config.yaml" not recognised #363

iromeo opened this issue May 18, 2021 · 4 comments · Fixed by #377
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@KrGolovin
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bug Something isn't working good_for_next_release inspections Code inspections
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2021.2.657

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@iromeo
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iromeo commented May 18, 2021

Default path "config/config.yaml" not recognised.

See recommended project layout https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html

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@iromeo iromeo added bug Something isn't working inspections Code inspections labels May 18, 2021
@iromeo iromeo added this to the next major milestone May 18, 2021
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iromeo commented May 18, 2021

P.S: in line 3 should be configfile: "config/config.yaml" but it is also highlighted as error

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iromeo commented Jul 6, 2021

See path_in_workflow_sections_completion.feature

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iromeo commented Jul 6, 2021 •
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and SmkConfigfileReference

KrGolovin added a commit that referenced this issue Jul 14, 2021
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Merge branch 'master' into features/#363-unresolved-configfile-path
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@iromeo iromeo mentioned this issue Jul 14, 2021
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iromeo pushed a commit that referenced this issue Jul 14, 2021
@KrGolovin
features/#363 Adding support for default path on configfile (#377)
9240445 
feat: Adding support for default path of configfile #363

* Adding support for default path of configfile #363
* refactor: Convert all flags to class variables
* fix: Remove unnecessary parentheses from function call with lambda
* fix: Delete redundant flag "makePathRelativelyCurrentFolder"

Co-authored-by: Kirill Golovin <[email protected]>
Co-authored-by: Roman Chernyatchik <[email protected]>

Resolves: #363
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iromeo commented Jul 14, 2021

Demo

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features/#363 Adding support for default path on configfile JetBrains-Research/snakecharm
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@iromeo @KrGolovin