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rules
E.g here foo is accessed via checkpoints and rules
foo
checkpoint foo: output: key1="{sample}.tsv", key2="{sample}.txt" def boo_input(wildcards): path = checkpoints.foo.get(**wildcards).output.key1 df = pd.read_csv(path, sep="\t") return tuple(df[df["mask"]]["File"]) rule boo: input: boo_input output: "too/{sample}.txt" log: "too/{sample}.txt.log" shell: "echo {input:q} 1>{output} 2>{log}" rule all: input: expand( [ rules.foo.output.key1, rules.foo.output.key2, rules.boo.output ], sample=["A", "B"] ),
The text was updated successfully, but these errors were encountered:
Now resolve/completion allow using checkpoints after 'rules' keyword.
e722b28
Resolves: #262
Merge branch 'master' into features/#262-checkpoints-in-rules
1669762
b8d2e7e
0b4f2b3
dakochik
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E.g here
foo
is accessed via checkpoints and rulesThe text was updated successfully, but these errors were encountered: