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Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

Python 355 55 Updated Dec 21, 2024

A Zsh theme

Shell 48,067 2,250 Updated Jan 29, 2025

Oh my tmux! My self-contained, pretty & versatile tmux configuration made with 💛🩷💙🖤❤️🤍

Shell 22,609 3,399 Updated Feb 26, 2025

Pretrain, finetune ANY AI model of ANY size on multiple GPUs, TPUs with zero code changes.

Python 29,042 3,439 Updated Feb 26, 2025

Perturbation Analysis in the scverse ecosystem.

Python 156 26 Updated Feb 26, 2025

Supercharge Your Model Training

Python 5,297 433 Updated Feb 26, 2025

Fast and memory-efficient exact attention

Python 15,935 1,497 Updated Feb 25, 2025

😎 Awesome lists about all kinds of interesting topics

348,864 28,587 Updated Feb 5, 2025

为GPT/GLM等LLM大语言模型提供实用化交互接口,特别优化论文阅读/润色/写作体验,模块化设计,支持自定义快捷按钮&函数插件,支持Python和C++等项目剖析&自译解功能,PDF/LaTex论文翻译&总结功能,支持并行问询多种LLM模型,支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…

Python 67,705 8,302 Updated Feb 21, 2025

Inference Llama 2 in one file of pure C

C 18,083 2,199 Updated Aug 6, 2024

A grammar of graphics for comparative genomics

R 649 66 Updated Jan 31, 2025

Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!

Python 412 20 Updated Feb 26, 2025

Multimodal Data (.h5mu) implementation for Python

Python 87 18 Updated Feb 10, 2025

muon is a multimodal omics Python framework

Python 226 31 Updated Jan 30, 2025

Spatial Single Cell Analysis in Python

Python 466 89 Updated Feb 24, 2025

Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""

Jupyter Notebook 40 6 Updated Sep 14, 2022

Conda recipes for the bioconda channel.

Shell 1,699 3,378 Updated Feb 26, 2025

Benchmarking analysis of data integration tools

Python 334 66 Updated Jan 14, 2025

Resources associated with "A multimodal cell census and atlas of the mammalian primary motor cortex"

21 3 Updated Jul 16, 2021

Graph-linked unified embedding for single-cell multi-omics data integration

Python 400 58 Updated Feb 23, 2024

A Python nearest neighbor descent for approximate nearest neighbors

Python 913 107 Updated Nov 10, 2024

A Grammar of Graphics for Python

Python 4,136 231 Updated Feb 20, 2025

A game theoretic approach to explain the output of any machine learning model.

Jupyter Notebook 23,438 3,330 Updated Feb 14, 2025

Performant Pythonic GenomicRanges

Python 453 47 Updated Jun 4, 2024

python module to plot beautiful and highly customizable genome browser tracks

Python 795 117 Updated Jul 10, 2024

Pipeline for annotating genomes using long read transcriptomics data with pinfish

Python 28 5 Updated Dec 8, 2020

Fast numerical array expression evaluator for Python, NumPy, Pandas, PyTables and more

Python 2,275 215 Updated Feb 7, 2025

Implement efficient jacobian method available for most pytorch networks

Python 44 4 Updated Jun 8, 2020

Multi-Omics Simulation in R

R 4 1 Updated Feb 19, 2024
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