Tests

Display files from referenced crossref in entry table (Toro520 version) #13530

Workflow file for this run

	name: Tests

	on:
	push:
	branches:
	- main
	- main-release
	pull_request:
	merge_group:
	workflow_dispatch:

	env:
	SpringerNatureAPIKey: ${{ secrets.SpringerNatureAPIKey }}
	AstrophysicsDataSystemAPIKey: ${{ secrets.AstrophysicsDataSystemAPIKey }}
	IEEEAPIKey: ${{ secrets.IEEEAPIKey }}
	BiodiversityHeritageApiKey: ${{ secrets.BiodiversityHeritageApiKey}}
	GRADLE_OPTS: -Xmx4g
	JAVA_OPTS: -Xmx4g

	concurrency:
	group: tests-${{ github.head_ref }}
	cancel-in-progress: true

	permissions:
	pull-requests: write

	jobs:
	checkstyle:
	name: Checkstyle
	runs-on: ubuntu-latest
	steps:
	- name: Checkout source
	uses: actions/checkout@v4
	with:
	submodules: 'true'
	show-progress: 'false'
	- name: Set up JDK
	uses: actions/setup-java@v3
	with:
	java-version: 21.0.1
	distribution: 'liberica'
	cache: 'gradle'
	- name: Run checkstyle reporter
	uses: nikitasavinov/checkstyle-action@master
	with:
	reporter: github-pr-review
	github_token: ${{ secrets.GITHUB_TOKEN }}
	checkstyle_config: 'config/checkstyle/checkstyle_reviewdog.xml'
	checkstyle_version: '10.3'
	- name: Run checkstyle using gradle
	run: ./gradlew checkstyleMain checkstyleTest checkstyleJmh
	- name: Add comment on pull request
	if: ${{ failure() }}
	uses: thollander/actions-comment-pull-request@v2
	with:
	message: >
	Your code currently does not meet JabRef's code guidelines.
	We use [Checkstyle](https://checkstyle.sourceforge.io/) to identify issues.
	The tool reviewdog already placed comments on GitHub to indicate the places. See the tab "Files" in you PR.
	Please carefully follow [the setup guide for the codestyle](https://devdocs.jabref.org/getting-into-the-code/guidelines-for-setting-up-a-local-workspace/intellij-13-code-style.html).
	Afterwards, please run checkstyle locally and fix the issues.


	More information on code quality in JabRef is available at <https://devdocs.jabref.org/getting-into-the-code/development-strategy.html>.
	comment_tag: checkstyle
	openrewrite:
	name: OpenRewrite
	runs-on: ubuntu-latest
	steps:
	- name: Checkout source
	uses: actions/checkout@v4
	with:
	submodules: 'true'
	show-progress: 'false'
	- name: Set up JDK
	uses: actions/setup-java@v3
	with:
	java-version: 21.0.1
	distribution: 'liberica'
	cache: 'gradle'
	- name: Run OpenRewrite
	run: \|
	./gradlew rewriteDryRun
	- name: Add comment on pull request
	if: ${{ failure() }}
	uses: thollander/actions-comment-pull-request@v2
	with:
	message: >
	Your code currently does not meet JabRef's code guidelines.
	We use [OpenRewrite](https://docs.openrewrite.org/) to ensure "modern" Java coding practices.
	The issues found can be automatically fixed.
	Please execute the gradle task `rewriteRun`, check the results, commit, and push.


	You can check the detailed error output at the tab "Checks", section "Tests" (on the left), subsection "OpenRewrite".
	comment_tag: openrewrite
	modernizer:
	name: Modernizer
	runs-on: ubuntu-latest
	steps:
	- name: Checkout source
	uses: actions/checkout@v4
	with:
	submodules: 'true'
	show-progress: 'false'
	- name: Set up JDK
	uses: actions/setup-java@v3
	with:
	java-version: 21.0.1
	distribution: 'liberica'
	cache: 'gradle'
	- name: Run modernizer
	run: \|
	# enable failing of this task if modernizer complains
	sed -i "s/failOnViolations = false/failOnViolations = true/" build.gradle
	./gradlew modernizer
	- name: Add comment on pull request
	if: ${{ failure() }}
	uses: thollander/actions-comment-pull-request@v2
	with:
	message: >
	Your code currently does not meet JabRef's code guidelines.
	We use [Gradle Modernizer Plugin](https://github.com/andygoossens/gradle-modernizer-plugin#gradle-modernizer-plugin) to ensure "modern" Java coding practices.
	Please fix the detected errors, commit, and push.


	You can check the detailed error output at the tab "Checks", section "Tests" (on the left), subsection "Modernizer".
	comment_tag: modernizer
	markdown:
	name: Markdown
	runs-on: ubuntu-latest
	steps:
	- name: Checkout source
	uses: actions/checkout@v4
	with:
	submodules: 'false'
	show-progress: 'false'
	- name: markdownlint-cli2-action
	uses: DavidAnson/markdownlint-cli2-action@v13
	with:
	globs: \|
	*.md
	docs/*/.md
	- name: Add comment on pull request
	if: ${{ failure() }}
	uses: thollander/actions-comment-pull-request@v2
	with:
	message: >
	You modified Markdown (*.md) files.
	To ensure consistent styling, we have [markdown-lint](https://github.com/DavidAnson/markdownlint) in place.
	[Markdown lint's rules](https://github.com/DavidAnson/markdownlint/blob/main/doc/Rules.md#rules) help to keep our Markdown files consistent within this repository and consistent with the Markdown files outside here.

	You can check the detailed error output at the tab "Checks", section "Tests" (on the left), subsection "Markdown".
	comment_tag: markdown
	changelog-non-frozen:
	name: CHANGELOG.md
	runs-on: ubuntu-latest
	steps:
	- name: Checkout source
	uses: actions/checkout@v4
	with:
	submodules: 'false'
	show-progress: 'false'
	fetch-depth: 0
	- name: Lint CHANGELOG.md
	run: \|
	# Install jbang
	curl -Ls https://sh.jbang.dev \| bash -s - app setup
	export PATH=$PATH:$HOME/.jbang/bin

	# ensure that refs are available
	BRANCH=`git rev-parse HEAD`
	git checkout main

	# run heylogs verification
	jbang --repos jitpack,central -m nbbrd.heylogs.cli.HeylogsCommand com.github.koppor.heylogs:heylogs-cli:jitpack-SNAPSHOT check CHANGELOG.md --gitdiff main...$BRANCH > heylogs.txt \|\| true

	# improve output
	sed -i 's/consistent-separator/consistent-separator (ignored)/' heylogs.txt
	sed -i 's/all-h2-contain-a-version/all-h2-contain-a-version (ignored)/' heylogs.txt

	cat heylogs.txt

	# exit 1 in case of error
	# We have 2 "valid" issues in CHANGELOG.md
	grep -q "2 problems" heylogs.txt \|\| exit 1
	- name: Add comment on pull request
	if: ${{ failure() }}
	uses: thollander/actions-comment-pull-request@v2
	with:
	message: >
	While the PR was in progress, JabRef released a new version.
	You have to merge `upstream/main` and move your entry in `CHANGELOG.md` to section `## [Unreleased]`.


	It might also be that another CHANGELOG.md issue arose.
	You can check the detailed error output at the tab "Checks", section "Tests" (on the left), subsection "CHANGELOG.md".
	comment_tag: changelog
	tests:
	name: Unit tests
	runs-on: ubuntu-latest
	steps:
	- name: Checkout source
	uses: actions/checkout@v4
	with:
	submodules: 'true'
	show-progress: 'false'
	- name: Set up JDK
	uses: actions/setup-java@v3
	with:
	java-version: 21.0.1
	distribution: 'liberica'
	cache: 'gradle'
	- name: Run tests
	run: xvfb-run --auto-servernum ./gradlew check -x checkstyleJmh -x checkstyleMain -x checkstyleTest -x modernizer
	env:
	CI: "true"
	- name: Format failed test results
	if: failure()
	run: \|
	sudo apt-get install -qq -y xml-twig-tools xsltproc
	scripts/after-failure.sh
	databasetests:
	name: Database tests
	runs-on: ubuntu-latest
	services:
	postgres:
	image: postgres:13-alpine
	env:
	POSTGRES_USER: postgres
	POSTGRES_PASSWORD: postgres
	POSTGRES_DB: postgres
	ports:
	- 5432:5432
	# needed because the postgres container does not provide a healthcheck
	options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
	steps:
	- name: Checkout source
	uses: actions/checkout@v4
	with:
	submodules: 'true'
	show-progress: 'false'
	- name: Set up JDK
	uses: actions/setup-java@v3
	with:
	java-version: 21.0.1
	distribution: 'liberica'
	cache: 'gradle'
	- name: Run tests on PostgreSQL
	run: ./gradlew databaseTest --rerun-tasks
	env:
	CI: "true"
	DBMS: "postgresql"
	- name: Shutdown Ubuntu MySQL
	run: sudo service mysql stop # Shutdown the Default MySQL, "sudo" is necessary, please not remove it
	- name: Start custom MySQL
	uses: mirromutth/[email protected]
	with:
	host port: 3800
	container port: 3307
	character set server: 'utf8'
	collation server: 'utf8_general_ci'
	mysql version: '8.0'
	mysql database: 'jabref'
	mysql root password: 'root'
	- name: Run tests on MySQL
	run: ./gradlew databaseTest --rerun-tasks
	env:
	CI: "true"
	DBMS: "mysql"
	guitests:
	name: GUI tests
	runs-on: ubuntu-latest
	steps:
	- name: Checkout source
	uses: actions/checkout@v4
	with:
	submodules: 'true'
	show-progress: 'false'
	- name: Set up JDK
	uses: actions/setup-java@v3
	with:
	java-version: 21.0.1
	distribution: 'liberica'
	cache: 'gradle'
	- name: Run GUI tests
	run: xvfb-run --auto-servernum ./gradlew guiTest
	env:
	CI: "true"
	codecoverage:
	name: Code coverage
	runs-on: ubuntu-latest
	services:
	postgres:
	image: postgres:10.8
	env:
	POSTGRES_USER: postgres
	POSTGRES_PASSWORD: postgres
	POSTGRES_DB: postgres
	ports:
	- 5432:5432
	# needed because the postgres container does not provide a healthcheck
	options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
	steps:
	- name: Check secrets presence
	id: checksecrets
	shell: bash
	run: \|
	if [ "$CODECOV_TOKEN" == "" ]; then
	echo "secretspresent=NO" >> $GITHUB_OUTPUT
	else
	echo "secretspresent=YES" >> $GITHUB_OUTPUT
	fi
	env:
	SNAPCRAFT_LOGIN_FILE: ${{ secrets.CODECOV_TOKEN }}
	- name: Checkout source
	uses: actions/checkout@v4
	with:
	submodules: 'true'
	show-progress: 'false'
	- name: Set up JDK
	uses: actions/setup-java@v3
	with:
	java-version: 21.0.1
	distribution: 'liberica'
	cache: 'gradle'
	- name: Update test coverage metrics
	if: steps.checksecrets.outputs.secretspresent == 'YES'
	run: xvfb-run --auto-servernum ./gradlew jacocoTestReport && bash <(curl -s https://codecov.io/bash);
	env:
	CI: "true"
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
	DBMS: "postgresql"
	# This is https://github.com/marketplace/actions/gradle-wrapper-validation
	# It ensures that the jar file is from gradle and not by a strange third party.
	gradlevalidation:
	name: "Validate Gradle Wrapper"
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	show-progress: 'false'
	- uses: gradle/wrapper-validation-action@v1
	# This ensures that no git merge conflict markers (<<<, ...) are contained
	merge_conflict_job:
	name: Find merge conflicts
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	show-progress: 'false'
	- name: Merge Conflict finder
	uses: olivernybroe/[email protected]

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Display files from referenced crossref in entry table (Toro520 version) #13530

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Display files from referenced crossref in entry table (Toro520 version) #13530

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