Run HybPiper parallelized on scarcity An alternate single run option is also provided.
See here for a hybpiper tutorial and more information on the tool: https://github.com/mossmatters/HybPiper/wiki/Tutorial
Copy run_hybpiper.sh into the desired run folder, modify the input and targets file paths, and run with bash. Only recommended for small numbers of read sets, for large datasets use the pipeline version below.
Copy vars.config and makeDAG.sh into run folder. Modify vars.config as needed, "[]" around variables needing adjustment. Run "bash makeDAG.sh". Run "condor_submit_dag hybpiper.dag".