Use SABER blocks chaining for training #852
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@travissluka note that the plan is to merge this PR tomorrow morning. I think changes in ewok B matrix experiment yamls may be required (minimal, similar to changes in test yamls), and may affect soca-science as well. |
travissluka
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Apr 18, 2023
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This PR can be merged now. |
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* Use SABER blocks chaining for training (#852) * Adapt to name changes in ufo (#867) * Use VertInterp instead of MarineVertInterp (#874) * remove linear var change from ensevariance ctest (#881) * Bugfixes for BUMP (#869) * A few fixes to the Model to Analysis variable change (#847) * Remove discontinuities in the balance op (#885) * set to min/max instead of 0 * ... * vanilla vert conv * tidy sign * removed jac_mask * tanh filt * updated yamls and test refs * merge develop and update answers after the develop history MESS i created * code tidy/removed vanilla --------- Co-authored-by: Travis Sluka <[email protected]> * default plots (#888) Co-authored-by: Travis Sluka <[email protected]> * add VADER to SOCA (#887) * add vader to build, but dont use it * add State::fromFieldSet * variablechange "uses" vader * switched to ens. templ. (#894) * Implementation of EnsMeanAndVariance (#892) * added the ensmeanandvariance app * ... --------- Co-authored-by: Travis Sluka <[email protected]> * Read the std. dev. instead of the variance (#896) * skip sqrt, saving optional * forgot test yaml * Update test/testinput/varchange_bkgerrsoca_stddev.yml Co-authored-by: Travis Sluka <[email protected]> --------- Co-authored-by: Travis Sluka <[email protected]> * Use the generic oops interpolator (#898) * use oops interpolation * to_fieldset_ad * forgot some halo masks * fix horizfilt * fix some test answers * letkf workaround for missing val bug * work around for getvalues test * change obs input to have 1 guaranteed land point * Update version (#899) * remove ewok repo (#889) Co-authored-by: Yannick Trémolet <[email protected]> * Merge B matrix-related applications (#890) * Merge B matrix-related applications * Trigger tests --------- Co-authored-by: Benjamin Menetrier <[email protected]> Co-authored-by: Travis Sluka <[email protected]> * update for VADER PR#586 (#902) * add ModelData * fix coding norms * Update CMakeLists.txt * Fix vertical gradient (#914) * a fix dvdz * Updating test references --------- Co-authored-by: Hyun-Chul.Lee <[email protected]> * libs in soca * Commend out dirac.x test and disable ecbuild_install_project as we did for fv3-jedi prevent the following error: -- Configuring done CMake Error in soca/src/soca/CMakeLists.txt: Target "soca" INTERFACE_LINK_DIRECTORIES property contains path: "/Users/heinzell/work/ufs-bundle/20230714/ufs-bundle-use-jedi-develop/soca/src/soca/." which is prefixed in the source directory. -- Generating done CMake Generate step failed. Build files cannot be regenerated correctly. * Apply same bug fix as for fv3-jedi to fix missing linker path for MPI libraries due to ESMF bug --------- Co-authored-by: Benjamin Menetrier <[email protected]> Co-authored-by: Wojciech Śmigaj <[email protected]> Co-authored-by: Travis Sluka <[email protected]> Co-authored-by: Guillaume Vernieres <[email protected]> Co-authored-by: Yannick Trémolet <[email protected]> Co-authored-by: Benjamin Menetrier <[email protected]> Co-authored-by: Kriti Bhargava <[email protected]> Co-authored-by: Hyun-Chul.Lee <[email protected]> Co-authored-by: Dom Heinzeller <[email protected]>
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Description
Companion PR of https://github.com/JCSDA-internal/saber/pull/461