chore(deps): update dependency rocker-org/rocker-versioned2 to v4.4.2 - abandoned

.github/workflows/main-workflow.yml

@@ -61,7 +61,7 @@ jobs:
       image: r-minimal
       context: r-minimal
       base_image: base
-      r_version_1: 4.4.1
+      r_version_1: 4.4.2
       r_version_2: 4.3.3
     secrets: inherit
   r-datascience:
@@ -71,7 +71,7 @@ jobs:
       image: r-datascience
       context: r-datascience
       base_image: r-minimal
-      r_version_1: 4.4.1
+      r_version_1: 4.4.2
       r_version_2: 4.3.3
     secrets: inherit
   jupyter-python:
@@ -177,7 +177,7 @@ jobs:
       image: rstudio
       context: rstudio
       base_image: r-datascience
-      r_version_1: 4.4.1
+      r_version_1: 4.4.2
       r_version_2: 4.3.3
     secrets: inherit
   sparkr:
@@ -187,7 +187,7 @@ jobs:
       image: sparkr
       context: spark
       base_image: r-minimal
-      r_version_1: 4.4.1
+      r_version_1: 4.4.2
       r_version_2: 4.3.3
       spark_version: 3.5.3
       build_gpu: false
@@ -199,7 +199,7 @@ jobs:
       image: rstudio-sparkr
       context: rstudio
       base_image: sparkr
-      r_version_1: 4.4.1
+      r_version_1: 4.4.2
       r_version_2: 4.3.3
       spark_version: 3.5.3
       build_gpu: false
@@ -211,7 +211,7 @@ jobs:
       image: jupyter-r
       context: jupyter
       base_image: r-datascience
-      r_version_1: 4.4.1
+      r_version_1: 4.4.2
       r_version_2: 4.3.3
       build_gpu: false
     secrets: inherit
@@ -222,7 +222,7 @@ jobs:
       image: r-python-julia
       context: r-python-julia
       base_image: r-minimal
-      r_version_1: 4.4.1
+      r_version_1: 4.4.2
       build_gpu: false
     secrets: inherit
   vscode-r-python-julia:
@@ -232,7 +232,7 @@ jobs:
       image: vscode-r-python-julia
       context: vscode
       base_image: r-python-julia
-      r_version_1: 4.4.1
+      r_version_1: 4.4.2
       build_gpu: false
     secrets: inherit
   vscode-r:
@@ -242,7 +242,7 @@ jobs:
       image: vscode-r
       context: vscode
       base_image: r-datascience
-      r_version_1: 4.4.1
+      r_version_1: 4.4.2
       r_version_2: 4.3.3
       build_gpu: false
     secrets: inherit

dev/build-chain.py

@@ -1,8 +1,7 @@
+import argparse
 import subprocess
-import sys
 import shutil
 
-
 chains = {
     "rstudio": ["base", "r-minimal", "r-datascience", "rstudio"],
     "rstudio-sparkr": ["base", "r-minimal", "spark", "rstudio"],
@@ -24,42 +23,61 @@
     "vscode-python-minimal": ["base", "python-minimal", "vscode"],
     "r-python-julia": ["base", "r-minimal", "r-python-julia"],
     "vscode-r-python-julia": ["base", "r-minimal", "r-python-julia", "vscode"],
-    "vscode-r": ["base", "r-minimal", "r-datascience", "vscode"]
+    "vscode-r": ["base", "r-minimal", "r-datascience", "vscode"],
 }
 
-chain_name = sys.argv[1]
-chain = chains[chain_name]
 
-# GPU build if third argument says so
-GPU = len(sys.argv) >= 3 and sys.argv[2] == "gpu"
+# CLI configuration
+parser = argparse.ArgumentParser(description="Build a Docker image chain.")
+parser.add_argument(
+    "--chain",
+    required=True,
+    choices=chains.keys(),
+    help="The name of the chain to build (e.g., 'rstudio', 'python-datascience').",
+)
+parser.add_argument(
+    "--gpu",
+    action="store_true",
+    help="Whether to build with GPU support."
+)
+parser.add_argument(
+    "--version",
+    help="Specify a version for R or Python."
+)
+
 
-# Specific R/Python version specified in fourth argument
-version = sys.argv[3] if len(sys.argv) >= 4 else None
-language_key = "PYTHON_VERSION" if "python-minimal" in chain else "R_VERSION"
+if __name__ == "__main__":
 
-for i, image in enumerate(chain):
+    # Parse build configuration from CLI args
+    args = parser.parse_args()
+    chain_name = args.chain
+    chain = chains[chain_name]
+    gpu = args.gpu
+    version = args.version
+    language_key = "PYTHON_VERSION" if "python-minimal" in chain else "R_VERSION"
 
-    if image == "base":
-        shutil.copytree("scripts", "base/scripts", dirs_exist_ok=True)
-        if GPU:
-            previous_image = "nvidia/cuda:12.4.1-cudnn-devel-ubuntu22.04"
+    # Build chain
+    for i, image in enumerate(chain):
+        if image == "base":
+            shutil.copytree("scripts", "base/scripts", dirs_exist_ok=True)
+            previous_image = "nvidia/cuda:12.4.1-cudnn-devel-ubuntu22.04" if gpu else "ubuntu:22.04"
         else:
-            previous_image = "ubuntu:22.04"
-    else:
-        previous_image = chain[i-1]
+            previous_image = chain[i - 1]
 
-    device_suffix = "-gpu" if GPU else ""
+        device_suffix = "-gpu" if gpu else ""
 
-    if i < len(chain) - 1:
-        tag = image
-    else:
-        tag = f"inseefrlab/onyxia-{chain_name}:dev"
+        if i < len(chain) - 1:
+            tag = image
+        else:
+            tag = f"inseefrlab/onyxia-{chain_name}:dev"
 
-    cmd = ["docker", "build", "--progress=plain", image, "-t", tag,
-           "--build-arg", f"BASE_IMAGE={previous_image}",
-           "--build-arg", f"DEVICE_SUFFIX={device_suffix}"]
-    if version:
-        cmd.extend(["--build-arg", f"{language_key}={version}"])
+        cmd = [
+            "docker", "build", "--progress=plain", image, "-t", tag,
+            "--build-arg", f"BASE_IMAGE={previous_image}",
+            "--build-arg", f"DEVICE_SUFFIX={device_suffix}"
+        ]
+        if version:
+            cmd.extend(["--build-arg", f"{language_key}={version}"])
 
-    print(" ".join(cmd))
-    subprocess.run(cmd)
+        print(" ".join(cmd))
+        subprocess.run(cmd)

r-minimal/Dockerfile

@@ -4,7 +4,7 @@ FROM $BASE_IMAGE
 LABEL maintainer="InseeFrLab <[email protected]>"
 
 # R Config
-ARG R_VERSION="4.4.1"
+ARG R_VERSION="4.4.2"
 ENV R_VERSION=${R_VERSION}
 ENV R_HOME="/usr/local/lib/R"
 ENV DEFAULT_USER="${USERNAME}"