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fix: stop using rocker's script to install Python #204

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merged 1 commit into from
Apr 25, 2024
Merged

fix: stop using rocker's script to install Python #204

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10 changes: 5 additions & 5 deletions r-python-julia/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ FROM $BASE_IMAGE
LABEL maintainer="InseeFrLab <[email protected]>"

ENV JULIA_DIR="/opt/julia"
ENV PATH="${JULIA_DIR}/bin:${PATH}"
ENV PATH="${HOME}/.local/bin:${JULIA_DIR}/bin:${PATH}"

# Python config for the `reticulate` package
ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
Expand All @@ -14,11 +14,11 @@ USER root

COPY requirements.txt .

RUN wget -O - https://raw.githubusercontent.com/rocker-org/rocker-versioned2/R${R_VERSION}/scripts/install_python.sh | bash && \
# Install base Python packages
RUN /opt/install-julia.sh && \
# Install common Python packages
pip3 install -r requirements.txt && \
# Install Julia
/opt/install-julia.sh && \
# Install reticulate to use Python in R
install2.r --error reticulate && \
# Install quarto
/opt/install-quarto.sh && \
# Clean
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4 changes: 2 additions & 2 deletions r-python-julia/tests.yaml
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Expand Up @@ -42,8 +42,8 @@ commandTests:
expectedOutput: ["/usr/local/bin/R"]
- name: "Does the binary exists?"
command: "which"
args: ["python"]
expectedOutput: ["/usr/local/bin/python"]
args: ["python3"]
expectedOutput: ["/usr/bin/python3"]
- name: "Does the binary exists?"
command: "which"
args: ["julia"]
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