Change calls to animaComputeDTIScalarMaps into animaDTIScalarMaps

Inria-Empenn · Dec 13, 2021 · 4c7160e · 4c7160e
1 parent e425047
commit 4c7160e
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/atlasing/dti/animaMergeDTImages.py b/atlasing/dti/animaMergeDTImages.py
@@ -45,7 +45,7 @@
 animaImageArithmetic = os.path.join(animaDir,"animaImageArithmetic")
 animaTransformSerieXmlGenerator = os.path.join(animaDir,"animaTransformSerieXmlGenerator")
 animaTensorApplyTransformSerie = os.path.join(animaDir,"animaTensorApplyTransformSerie")
-animaComputeDTIScalarMaps = os.path.join(animaDir,"animaComputeDTIScalarMaps")
+animaDTIScalarMaps = os.path.join(animaDir,"animaDTIScalarMaps")
 animaThrImage = os.path.join(animaDir,"animaThrImage")
 animaMaskImage = os.path.join(animaDir,"animaMaskImage")
 
@@ -111,7 +111,7 @@
     call(command)
     myfileImages.write(os.path.join("tempDir", args.prefix + "_" + str(a) + "_at.nrrd\n"))
 
-    command = [animaComputeDTIScalarMaps,"-i",os.path.join("tempDir",args.prefix + "_" + str(a) + "_at.nrrd"),
+    command = [animaDTIScalarMaps,"-i",os.path.join("tempDir",args.prefix + "_" + str(a) + "_at.nrrd"),
                "-a",os.path.join("tempDir",args.prefix + "_" + str(a) + "_at_ADC.nrrd")]
     call(command)
 

diff --git a/atlasing/dti/animaRegisterDTImage.py b/atlasing/dti/animaRegisterDTImage.py
@@ -39,7 +39,7 @@
 os.chdir(args.ref_dir)
 basePrefBase = os.path.dirname(args.prefix_base)
 
-animaComputeDTIScalarMaps = os.path.join(animaDir,"animaComputeDTIScalarMaps")
+animaDTIScalarMaps = os.path.join(animaDir,"animaDTIScalarMaps")
 animaCreateImage = os.path.join(animaDir,"animaCreateImage")
 animaMaskImage = os.path.join(animaDir,"animaMaskImage")
 animaThrImage = os.path.join(animaDir,"animaThrImage")
@@ -55,12 +55,12 @@
 filesExtension = args.files_extension
 
 # Extract DTI scalar map
-command = [animaComputeDTIScalarMaps,
+command = [animaDTIScalarMaps,
            "-i", os.path.join(args.prefix_base, args.prefix + "_" + str(args.num_image) + filesExtension),
            "-a", os.path.join(args.prefix_base, args.prefix + "_" + str(args.num_image) + "_ADC.nrrd")]
 call(command)
 
-command = [animaComputeDTIScalarMaps, "-i", args.ref_image, "-a",
+command = [animaDTIScalarMaps, "-i", args.ref_image, "-a",
            os.path.join(basePrefBase, "tempDir", args.prefix + "_" + str(args.num_image) + "_ref_ADC.nrrd")]
 call(command)