This project is being developed as part of the G2OI project, cofinanced by the European Union, the Reunion region, and the French Republic.
This is the code used to train the model, and prepare the outputs for the preprint named Predicting species distributions in the open oceans with convolutional neural networks, available on bioRxiv. Please refer to the Methods section of this article for information on using this repository.
This code uses the Malpolon framework, created and maintained by the Pl@ntNet team at INRIA. See the original repository for installation instructions and documentation. As we had to slightly edit some files, we include the modified version in this repository.
The root of this directory is the same as the original malpolon repository, except non-essential elements were removed. All code that is specific to our use case is in the open-oceans folder.
If you use this work please cite the related article:
Morand, Gaétan; Joly, Alexis; Rouyer, Tristan; Lorieul, Titouan; Barde, Julien. Predicting species distributions in the open ocean with convolutional neural networks. Peer Community Journal, Volume 4 (2024), article no. e93. doi : 10.24072/pcjournal.471. https://peercommunityjournal.org/articles/10.24072/pcjournal.471/