Integrated OBO ontology store
- Merged set of mutually referential OBO ontologies:
- Uberon anatomy
- Cell Ontology (CL)
- Gene Ontology (GO)
- Biospatial Ontology (BSPO)
- Phenotype and Trait Ontology (PATO)
- Human Phenotype Ontology (HPO)
- Monarch Disease Ontology (MONDO)
- Chemical Entities of Biological Interest (ChEBI)
- Relations Ontology (RO)
- Environmental conditions, treatments and exposures ontology (ECTO)
- Environment Ontology (ENVO)
- Ontology for Biomedical Investigations (OBI)
- Medical Action Ontology (MAXO)
- Evidence and Conclusion Ontology (ECO)
- NCBI Taxonomy (slim version)
- Experimental Factor Ontology (EFO)
- Protein Ontology (PRO)
- NCIt OBO Edition (NCIT)
- Precomputed OWL classification (class hierarchy)
- Materialized “class relations” from existential property restrictions (in separate named graphs)
- Blazegraph RDF triplestore; SPARQL query interface
SPARQL endpoint: https://stars-app.renci.org/ubergraph/sparql
- Query interface in YASGUI: https://api.triplydb.com/s/_26lcKdBY
Development of Ubergraph has been supported by the NCATS Biomedical Data Translator project, as well as by RENCI.