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Ubergraph image

Integrated OBO ontology store

  • Merged set of mutually referential OBO ontologies:
    • Uberon anatomy
    • Cell Ontology (CL)
    • Gene Ontology (GO)
    • Biospatial Ontology (BSPO)
    • Phenotype and Trait Ontology (PATO)
    • Human Phenotype Ontology (HPO)
    • Monarch Disease Ontology (MONDO)
    • Chemical Entities of Biological Interest (ChEBI)
    • Relations Ontology (RO)
    • Environmental conditions, treatments and exposures ontology (ECTO)
    • Environment Ontology (ENVO)
    • Ontology for Biomedical Investigations (OBI)
    • Medical Action Ontology (MAXO)
    • Evidence and Conclusion Ontology (ECO)
    • NCBI Taxonomy (slim version)
    • Experimental Factor Ontology (EFO)
    • Protein Ontology (PRO)
    • NCIt OBO Edition (NCIT)
  • Precomputed OWL classification (class hierarchy)
  • Materialized “class relations” from existential property restrictions (in separate named graphs)
  • Blazegraph RDF triplestore; SPARQL query interface

SPARQL endpoint: https://stars-app.renci.org/ubergraph/sparql

Support

Development of Ubergraph has been supported by the NCATS Biomedical Data Translator project, as well as by RENCI.