Ubergraph

Integrated OBO ontology store

Merged set of mutually referential OBO ontologies:
- Uberon anatomy
- Cell Ontology (CL)
- Gene Ontology (GO)
- Biospatial Ontology (BSPO)
- Phenotype and Trait Ontology (PATO)
- Human Phenotype Ontology (HPO)
- Monarch Disease Ontology (MONDO)
- Chemical Entities of Biological Interest (ChEBI)
- Relations Ontology (RO)
- Environmental conditions, treatments and exposures ontology (ECTO)
- Environment Ontology (ENVO)
- Ontology for Biomedical Investigations (OBI)
- Medical Action Ontology (MAXO)
- Evidence and Conclusion Ontology (ECO)
- NCBI Taxonomy (slim version)
- Experimental Factor Ontology (EFO)
- Protein Ontology (PRO)
- NCIt OBO Edition (NCIT)
Precomputed OWL classification (class hierarchy)
Materialized “class relations” from existential property restrictions (in separate named graphs)
Blazegraph RDF triplestore; SPARQL query interface

SPARQL endpoint: https://stars-app.renci.org/ubergraph/sparql

Support

Development of Ubergraph has been supported by the NCATS Biomedical Data Translator project, as well as by RENCI.