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Adding step to build pandoc for sphinx docs #2204

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Adding step to build pandoc for sphinx docs

Adding step to build pandoc for sphinx docs #2204

Workflow file for this run

.github/workflows/main.yaml at 6640f61
# Built from:
# https://docs.github.com/en/actions/guides/building-and-testing-python
# https://github.com/snok/install-poetry#workflows-and-tips
name: Build and test
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
lint:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [ '3.9', '3.10', '3.12' ]
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/[email protected]
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
pip install tox
- name: Check code quality with ruff
run: tox -e lint
test:
strategy:
fail-fast: false
matrix:
os: [ ubuntu-latest, windows-latest ]
python-version: [ "3.9", "3.10", "3.11" ]
exclude:
- os: windows-latest
python-version: "3.9"
runs-on: ${{ matrix.os }}
steps:
#----------------------------------------------
# check-out repo and set-up python
#----------------------------------------------
- name: Check out repository
uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
#----------------------------------------------
# install & configure poetry
#----------------------------------------------
- name: Install Poetry
run: |
pip install --upgrade pip
pip install poetry
# uses: snok/[email protected]
# with:
# virtualenvs-create: true
# virtualenvs-in-project: true
#----------------------------------------------
# load cached venv if cache exists
#----------------------------------------------
# - name: Load cached venv
# id: cached-poetry-dependencies
# uses: actions/cache@v3
# with:
# path: .venv
# key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }}
#----------------------------------------------
# install dependencies if cache does not exist
#----------------------------------------------
- name: Install dependencies
# if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
run: |
poetry add setuptools@latest
poetry install --no-interaction --no-root
#----------------------------------------------
# install your root project, if required
#----------------------------------------------
- name: Install library
run: poetry install --no-interaction --extras "gilda semsimian"
- name: Get Gilda resources
run: |
poetry run python -c "import nltk; nltk.download('punkt_tab'); nltk.download('stopwords')"
poetry run python -m adeft.download
#----------------------------------------------
# run test suite + coverage report
#----------------------------------------------
- name: Generate coverage results
run: |
poetry run pip install -U pytest
poetry run coverage run -p -m pytest tests/
poetry run coverage combine
poetry run coverage xml
poetry run coverage report -m
shell: bash
env:
BIOPORTAL_API_KEY: ${{ secrets.BIOPORTAL_API_KEY }}
#----------------------------------------------
# upload coverage results
#----------------------------------------------
- name: Upload coverage report
uses: codecov/[email protected]
with:
name: codecov-results-${{ matrix.os }}-${{ matrix.python-version }}
token: ${{ secrets.CODECOV_TOKEN }}
file: ./coverage.xml
fail_ci_if_error: false