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@IMS-Bio2Core-Facility

IMS Bio2Core Facility

Bioinformatics and Biostatistics Core facility - Institute of Metabolic Science, Cambridge

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  1. GTExSnake GTExSnake Public

    A fully concurrent pipeline for querying transcript-level GTEx data in specific tissues

    Python 3 1

  2. BIC086 BIC086 Public

    GTEx isoform expression queries for transcription factors in human hypothalamus.

    Python 2

  3. lta lta Public

    A Python command line interface for analysing lipidomics data

    Python 2 2

  4. single_snake_sequencing single_snake_sequencing Public

    A Snakemake workflow for standardised sc/snRNAseq analysis

    Python 2 2

  5. GTExQuery GTExQuery Public

    Multithreading, data handling, and file manipulation for the GTExSnake pipeline

    Python 1 1

  6. polya_liftover polya_liftover Public

    A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

    Python 1

Repositories

Showing 10 of 10 repositories
  • lta Public

    A Python command line interface for analysing lipidomics data

    IMS-Bio2Core-Facility/lta’s past year of commit activity
    Python 2 MIT 2 3 1 Updated Jun 9, 2022
  • boolean_jaccard Public

    Calculate Jacquard metrics for boolean vectors.

    IMS-Bio2Core-Facility/boolean_jaccard’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 27, 2022
  • polya_liftover Public

    A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

    IMS-Bio2Core-Facility/polya_liftover’s past year of commit activity
    Python 1 MIT 0 2 0 Updated Jan 27, 2022
  • GTExSnake Public

    A fully concurrent pipeline for querying transcript-level GTEx data in specific tissues

    IMS-Bio2Core-Facility/GTExSnake’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Jan 13, 2022
  • single_snake_sequencing Public

    A Snakemake workflow for standardised sc/snRNAseq analysis

    IMS-Bio2Core-Facility/single_snake_sequencing’s past year of commit activity
    Python 2 MIT 2 0 0 Updated Jan 13, 2022
  • GTExQuery Public

    Multithreading, data handling, and file manipulation for the GTExSnake pipeline

    IMS-Bio2Core-Facility/GTExQuery’s past year of commit activity
    Python 1 MIT 1 1 0 Updated Oct 27, 2021
  • BIC016a-Samuel-Furse Public
    IMS-Bio2Core-Facility/BIC016a-Samuel-Furse’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 10, 2021
  • BIC016-Samuel-Furse Public

    Lipid Traffic Analysis

    IMS-Bio2Core-Facility/BIC016-Samuel-Furse’s past year of commit activity
    R 0 0 0 0 Updated Jul 30, 2021
  • BIC086 Public

    GTEx isoform expression queries for transcription factors in human hypothalamus.

    IMS-Bio2Core-Facility/BIC086’s past year of commit activity
    Python 2 MIT 0 2 0 Updated Jul 6, 2021
  • BIC015-Ornela-Maloku Public Forked from Ornela88/Arabidopsis_Riboseq

    Analysis of ribosome profiling data from Arabidopsys thaliana

    IMS-Bio2Core-Facility/BIC015-Ornela-Maloku’s past year of commit activity
    R 0 2 0 0 Updated Mar 9, 2021

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