fix

ICGC-TCGA-PanCancer · Mar 27, 2018 · 26f15b9 · 26f15b9
1 parent 3c456c8
commit 26f15b9
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/workflow/main.yaml b/workflow/main.yaml
@@ -176,6 +176,7 @@ workflow:
         indel_padding: indel_padding
         snv_padding: snv_padding
         sv_padding: sv_padding
+        associated_vcfs: associated_vcfs
       depends_on:
       - completed@generate_minibam
 

diff --git a/workflow/tools/generate_song_payloads.py b/workflow/tools/generate_song_payloads.py
@@ -63,8 +63,7 @@ def create_payload_json(bam, experiment, input_directory, output_file, associate
     song_payload.add_info('indelPadding',indel_padding)
 
 
-    song_payload.add_info('full_size_bam', {key:bam[key] for key in ['aliquot_id','file_md5sum','file_name','file_size',
-                                                                     'object_id','oxog_score','song_analysis_id']})
+    song_payload.add_info('full_size_bam', {key:bam[key] for key in ['aliquot_id','file_md5sum','file_name','file_size','object_id']})
     song_payload.add_info('vcf_files',associated_vcfs)
 
     song_payload.to_json_file(output_file)