fix

ICGC-TCGA-PanCancer · Feb 14, 2018 · 2640f22 · 2640f22
1 parent a1b859b
commit 2640f22
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/tools/generate_song_payloads.py b/workflow/tools/generate_song_payloads.py
@@ -25,7 +25,7 @@
 save_output_json(task_dict)
 
 def create_payload_json(bam, analysis, experiment, input_directory, output_file):
-    donor_payload = DonorPayload(donor_gender=bam.get('sample').get('donor').get('submitter_id'),donor_submitter_id=bam.get('sample').get('donor').get('submitter_id'))
+    donor_payload = DonorPayload(donor_gender=bam.get('sample').get('donor').get('gender'),donor_submitter_id=bam.get('sample').get('donor').get('submitter_id'))
     experiment_payload = ExperimentPayload(aligned=experiment.get('aligned'),library_strategy=experiment.get('library_strategy'),reference_genome=experiment.get('reference_genome'))
 
     file_path = os.path.join(input_directory,bam.get('minibam').get('bam_file_name'))