What's Changed
Features
- Updated AMICI to v0.29.0 which comes with many new features and bug fixes (by @dweindl in #412)
- Added support for support for forward sensitivities (by @dweindl in #393)
- Use amici default options in generated HDF5 input files (by @dweindl in #392, #406)
- Set python package version via setuptools_scm (by @dweindl in #395)
- PEtab import: option to ignore initialization prior (by @dweindl in #402)
- Added scaffold for objective function / gradient evaluation with JSON I/O (by @dweindl in #400)
Fixes
- Fixed data race in aggregateLikelihood (by @dweindl in #411)
- PEtab pipeline:
- Fixed potentially incorrect initial state from condition table (by @dweindl in #408)
- Fail on problems using priors (they aren't supported and never have been) (by @dweindl in #384)
- Only compute sensitivities with respect to optimized parameters (by @dweindl in #394)
- HDF5 generation: Don't write obsolete sens_ind (by @dweindl in #407)
- Reduced clang warnings (by @dweindl in #397)
Full Changelog: v0.4.10...v0.5.0
Contributors
dweindl