v1.0.1

v1.0.1 (2016-06-30)

• Several protocol fixes:
  • Fixed bug when creating the output for Frealign (in some cases some information from input particles was not properly propagated)
  • Fixed some bugs in movie alignment protocols (summovie and unblur) and tests added
  • Some minor bugs fixed in Relion protocols
  • Bugs fixed in Resmap protocol when using two half volumes
• Fixed several bugs in Spider protocols:
  • converting input particles with alignment
  • wrong regular expression for replacing some variables in script template
  • parsing of the resulting dendrogram
  • some additional validations and removed unused code
• Bugfixes and inprovements in Xmipp protocols:
  • Protocols screen-classes merged into one: compare-reprojections
  • Complete refactoring of operate-particles and operate-volumes protocols (previously called 2D and 3D calculator). Tests added
• Picking and Viewer:
  • Warning if particles are picked in a temporary folder and the SetOfParticles was not created
  • Improved implementation of assign-tiltpairs protocol in Xmipp and some refactoring of picking methods
  • Fixed bug that caused GUI to freeze sometimes
  • Some bugs fixed when displaying and exporting particles
  • Sorting arrows displayed after sorting by a column. Hourglass displayed while sorting.
  • Some bug fixed when creating subset from classes
• Other fixes or improvements:
  • ImageHandler's methods convert and writeStack now accepts alignment parameters
  • Fixed bug when displaying Movies summary (sqlite files were not closed)
  • Fixed bug when spawning Eman process to write particles
  • Added REMOTE_MESA_LIB environment var for using OpenGL in remote desktops
  • Created a LegacyProtocol class to read deprecated protocols
  • Cleanup in some tests and added new ones for core classes or functions