Merge pull request #4 from annihen/add-fasttree

Concatenate fasta files and troubleshoot Fasttree
HydeLab · Jun 21, 2024 · 085d11f · 085d11f
2 parents 5fcbb12 + 4e322ff
commit 085d11f
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Showing 16 changed files with 549 additions and 4 deletions.
diff --git a/assets/samplesheet.csv b/assets/samplesheet.csv
@@ -1,3 +1,3 @@
 sample,fasta
 test1,/workspace/rnafoldanalyzer/assets/test-datasets/input/test_alphavirus.fasta.gz
-test2,/workspace/rnafoldanalyzer/assets/test-datasets/input/test_alphavirus.fasta.gz
+test2,/workspace/rnafoldanalyzer/assets/test-datasets/input/test_alphavirus2.fasta.gz
diff --git a/assets/test-datasets/input/test_alphavirus.fasta.gz b/assets/test-datasets/input/test_alphavirus.fasta.gz
diff --git a/assets/test-datasets/input/test_alphavirus2.fasta.gz b/assets/test-datasets/input/test_alphavirus2.fasta.gz
diff --git a/modules.json b/modules.json
@@ -5,6 +5,11 @@
         "https://github.com/nf-core/modules.git": {
             "modules": {
                 "nf-core": {
+                    "cat/cat": {
+                        "branch": "master",
+                        "git_sha": "9437e6053dccf4aafa022bfd6e7e9de67e625af8",
+                        "installed_by": ["modules"]
+                    },
                     "clustalo/align": {
                         "branch": "master",
                         "git_sha": "faf557ba56156ac0e5de76a25c1e3df11c944f59",
@@ -15,6 +20,11 @@
                         "git_sha": "f4ae1d942bd50c5c0b9bd2de1393ce38315ba57c",
                         "installed_by": ["modules"]
                     },
+                    "fasttree": {
+                        "branch": "master",
+                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "installed_by": ["modules"]
+                    },
                     "gunzip": {
                         "branch": "master",
                         "git_sha": "3a5fef109d113b4997c9822198664ca5f2716208",

diff --git a/modules/nf-core/cat/cat/environment.yml b/modules/nf-core/cat/cat/environment.yml
diff --git a/modules/nf-core/cat/cat/main.nf b/modules/nf-core/cat/cat/main.nf
diff --git a/modules/nf-core/cat/cat/meta.yml b/modules/nf-core/cat/cat/meta.yml
diff --git a/modules/nf-core/cat/cat/tests/main.nf.test b/modules/nf-core/cat/cat/tests/main.nf.test