Feature/rdmp-113 datasets (#1682)

* Dataset PR

Application/ResearchDataManagementPlatform/Program.cs

@@ -5,10 +5,8 @@
 // You should have received a copy of the GNU General Public License along with RDMP. If not, see <https://www.gnu.org/licenses/>.
 
 using System;
-using System.IO;
 using System.Runtime.InteropServices;
 using CommandLine;
-using Rdmp.Core.Curation.Data;
 using Rdmp.Core.ReusableLibraryCode;
 using Rdmp.Core.ReusableLibraryCode.Checks;
 using Rdmp.Core.Startup;

Application/ResearchDataManagementPlatform/WindowManagement/CollectionNavigation.cs

@@ -6,7 +6,6 @@
 
 using FAnsi.Discovery;
 using Rdmp.Core.CommandExecution;
-using System.Collections.Generic;
 using Equ;
 using Rdmp.Core.MapsDirectlyToDatabaseTable;
 

Application/ResearchDataManagementPlatform/WindowManagement/TopBar/RDMPTaskBarUI.cs

@@ -51,8 +51,11 @@ public RDMPTaskBarUI()
         btnTables.Image = CatalogueIcons.TableInfo.ImageToBitmap();
         btnTables.BackgroundImage = BackColorProvider.GetBackgroundImage(btnTables.Size, RDMPCollection.Tables);
 
-        btnLoad.Image = CatalogueIcons.LoadMetadata.ImageToBitmap();
-        btnLoad.BackgroundImage = BackColorProvider.GetBackgroundImage(btnLoad.Size, RDMPCollection.DataLoad);
+        btnDataSets.Image = CatalogueIcons.Dataset.ImageToBitmap();
+        btnDataSets.BackgroundImage = BackColorProvider.GetBackgroundImage(btnDataSets.Size, RDMPCollection.Datasets);
+
+        btnLoads.Image = CatalogueIcons.LoadMetadata.ImageToBitmap();
+        btnLoads.BackgroundImage = BackColorProvider.GetBackgroundImage(btnDataSets.Size, RDMPCollection.DataLoad);
 
         btnFavourites.Image = CatalogueIcons.Favourite.ImageToBitmap();
         btnDeleteLayout.Image = FamFamFamIcons.delete.ImageToBitmap();
@@ -106,8 +109,9 @@ private void SetupToolTipText()
             btnSavedCohorts.ToolTipText = "Finalised identifier lists, ready for linkage and extraction";
             btnDataExport.ToolTipText = "Show Projects and Extractable Dataset Packages allowing data extraction";
             btnTables.ToolTipText = "Advanced features e.g. logging, credentials, dashboards etc";
-            btnLoad.ToolTipText = "Load configurations for reading data into your databases";
+            btnLoads.ToolTipText = "Load configurations for reading data into your databases";
             btnFavourites.ToolTipText = "Collection of all objects that you have favourited";
+            btnDataSets.ToolTipText = "All external datasets that have been configured for use in RDMP";
         }
         catch (Exception e)
         {
@@ -180,12 +184,14 @@ private RDMPCollection ButtonToEnum(object button)
             collectionToToggle = RDMPCollection.DataExport;
         else if (button == btnTables)
             collectionToToggle = RDMPCollection.Tables;
-        else if (button == btnLoad)
+        else if (button == btnLoads)
             collectionToToggle = RDMPCollection.DataLoad;
         else if (button == btnSavedCohorts)
             collectionToToggle = RDMPCollection.SavedCohorts;
         else if (button == btnFavourites)
             collectionToToggle = RDMPCollection.Favourites;
+        else if (button == btnDataSets)
+            collectionToToggle = RDMPCollection.Datasets;
         else
             throw new ArgumentOutOfRangeException(nameof(button));
 

Application/ResearchDataManagementPlatform/WindowManagement/TopBar/RDMPTaskBarUI.resx

@@ -1,4 +1,64 @@
-<root>
+<?xml version="1.0" encoding="utf-8"?>
+<root>
+  <!--
+    Microsoft ResX Schema 
+
+    Version 2.0
+
+    The primary goals of this format is to allow a simple XML format
+    that is mostly human readable. The generation and parsing of the
+    various data types are done through the TypeConverter classes
+    associated with the data types.
+
+    Example:
+
+    ... ado.net/XML headers & schema ...
+    <resheader name="resmimetype">text/microsoft-resx</resheader>
+    <resheader name="version">2.0</resheader>
+    <resheader name="reader">System.Resources.ResXResourceReader, System.Windows.Forms, ...</resheader>
+    <resheader name="writer">System.Resources.ResXResourceWriter, System.Windows.Forms, ...</resheader>
+    <data name="Name1"><value>this is my long string</value><comment>this is a comment</comment></data>
+    <data name="Color1" type="System.Drawing.Color, System.Drawing">Blue</data>
+    <data name="Bitmap1" mimetype="application/x-microsoft.net.object.binary.base64">
+        <value>[base64 mime encoded serialized .NET Framework object]</value>
+    </data>
+    <data name="Icon1" type="System.Drawing.Icon, System.Drawing" mimetype="application/x-microsoft.net.object.bytearray.base64">
+        <value>[base64 mime encoded string representing a byte array form of the .NET Framework object]</value>
+        <comment>This is a comment</comment>
+    </data>
+
+    There are any number of "resheader" rows that contain simple
+    name/value pairs.
+
+    Each data row contains a name, and value. The row also contains a
+    type or mimetype. Type corresponds to a .NET class that support
+    text/value conversion through the TypeConverter architecture.
+    Classes that don't support this are serialized and stored with the
+    mimetype set.
+
+    The mimetype is used for serialized objects, and tells the
+    ResXResourceReader how to depersist the object. This is currently not
+    extensible. For a given mimetype the value must be set accordingly:
+
+    Note - application/x-microsoft.net.object.binary.base64 is the format
+    that the ResXResourceWriter will generate, however the reader can
+    read any of the formats listed below.
+
+    mimetype: application/x-microsoft.net.object.binary.base64
+    value   : The object must be serialized with
+            : System.Runtime.Serialization.Formatters.Binary.BinaryFormatter
+            : and then encoded with base64 encoding.
+    
+    mimetype: application/x-microsoft.net.object.soap.base64
+    value   : The object must be serialized with
+            : System.Runtime.Serialization.Formatters.Soap.SoapFormatter
+            : and then encoded with base64 encoding.
+
+    mimetype: application/x-microsoft.net.object.bytearray.base64
+    value   : The object must be serialized into a byte array
+            : using a System.ComponentModel.TypeConverter
+            : and then encoded with base64 encoding.
+    -->
   <xsd:schema id="root" xmlns="" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:msdata="urn:schemas-microsoft-com:xml-msdata">
     <xsd:import namespace="http://www.w3.org/XML/1998/namespace" />
     <xsd:element name="root" msdata:IsDataSet="true">
@@ -118,7 +178,7 @@
         TgDQASA1MVpwzwAAAABJRU5ErkJggg==
 </value>
   </data>
-  <data name="btnLoad.Image" type="System.Drawing.Bitmap, System.Drawing" mimetype="application/x-microsoft.net.object.bytearray.base64">
+  <data name="btnDataSets.Image" type="System.Drawing.Bitmap, System.Drawing" mimetype="application/x-microsoft.net.object.bytearray.base64">
     <value>
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@@ -192,54 +252,69 @@
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         TgDQASA1MVpwzwAAAABJRU5ErkJggg==
+</value>
+  </data>
+  <data name="btnLoads.Image" type="System.Drawing.Bitmap, System.Drawing" mimetype="application/x-microsoft.net.object.bytearray.base64">
+    <value>
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   </data>
   <data name="btnSaveWindowLayout.Image" type="System.Drawing.Bitmap, System.Drawing" mimetype="application/x-microsoft.net.object.bytearray.base64">
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Application/ResearchDataManagementPlatform/WindowManagement/WindowManager.cs

@@ -148,6 +148,12 @@ public PersistableToolboxDockContent Create(RDMPCollection collectionToCreate,
                     Image.Load<Rgba32>(CatalogueIcons.Favourite));
                 break;
 
+            case RDMPCollection.Datasets:
+                collection = new DatasetsCollectionUI();
+                toReturn = Show(RDMPCollection.Datasets, collection, "Datasets",
+                    Image.Load<Rgba32>(CatalogueIcons.Dataset));
+                break;
+
             default: throw new ArgumentOutOfRangeException(nameof(collectionToCreate));
         }
 

Rdmp.Core.Tests/Caching/Integration/CachingHostTests.cs

@@ -9,13 +9,11 @@
 using System.IO;
 using System.Threading;
 using System.Threading.Tasks;
-using NSubstitute;
 using NUnit.Framework;
 using Rdmp.Core.Caching;
 using Rdmp.Core.Curation;
 using Rdmp.Core.Curation.Data;
 using Rdmp.Core.Curation.Data.Cache;
-using Rdmp.Core.Curation.Data.Pipelines;
 using Rdmp.Core.DataFlowPipeline;
 using Rdmp.Core.ReusableLibraryCode.Progress;
 using Tests.Common;

Rdmp.Core.Tests/Caching/Unit/PipelineExecutionTests.cs

@@ -4,7 +4,6 @@
 // RDMP is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
 // You should have received a copy of the GNU General Public License along with RDMP. If not, see <https://www.gnu.org/licenses/>.
 
-using System;
 using NSubstitute;
 using NUnit.Framework;
 using Rdmp.Core.Caching.Pipeline;

Rdmp.Core.Tests/CommandExecution/CommandCliTests.cs

@@ -7,6 +7,7 @@
 using System;
 using System.Collections.Generic;
 using System.Linq;
+using System.Threading;
 using NSubstitute;
 using Rdmp.Core.CommandExecution;
 using Rdmp.Core.CommandLine.Interactive;
@@ -31,19 +32,28 @@ protected CommandInvoker GetInvoker()
         {
             DisallowInput = true
         });
-        invoker.CommandImpossible += (s, c) => throw new Exception(c.Command.ReasonCommandImpossible);
+        invoker.CommandImpossible += static (s, c) => throw new Exception(c.Command.ReasonCommandImpossible);
 
         return invoker;
     }
 
-    protected IBasicActivateItems GetMockActivator()
+    private readonly Lazy<IBasicActivateItems> _mockActivator;
+
+    protected CommandCliTests()
+    {
+        _mockActivator = new Lazy<IBasicActivateItems>(MakeMockActivator, LazyThreadSafetyMode.ExecutionAndPublication);
+    }
+
+    private IBasicActivateItems MakeMockActivator()
     {
         var mock = Substitute.For<IBasicActivateItems>();
         mock.RepositoryLocator.Returns(RepositoryLocator);
         mock.GetDelegates().Returns(new List<CommandInvokerDelegate>());
         return mock;
     }
 
+    protected IBasicActivateItems GetMockActivator() => _mockActivator.Value;
+
     /// <summary>
     /// Runs the provided string which should start after the cmd e.g. the bit after rdmp cmd
     /// </summary>

Rdmp.Core.Tests/CommandExecution/ExecuteCommandCreateDatasetTests.cs

@@ -0,0 +1,33 @@
+
+using NUnit.Framework;
+using Rdmp.Core.CommandExecution.AtomicCommands;
+using System;
+using System.Linq;
+using Rdmp.Core.CommandExecution;
+
+namespace Rdmp.Core.Tests.CommandExecution;
+
+public class ExecuteCommandCreateDatasetTests : CommandCliTests
+{
+    [Test]
+    public void TestDatasetCreationOKParameters() {
+        var cmd = new ExecuteCommandCreateDataset(GetMockActivator(),"dataset");
+        Assert.DoesNotThrow(()=>cmd.Execute());
+    }
+
+    [Test]
+    public void TestDatasetCreationNoParameters()
+    {
+        var cmd = new ExecuteCommandCreateDataset(GetMockActivator(), null);
+        Assert.Throws<ImpossibleCommandException>(cmd.Execute);
+    }
+
+    [Test]
+    public void TestDatasetCreationOKExtendedParameters()
+    {
+        var cmd = new ExecuteCommandCreateDataset(GetMockActivator(), "dataset2","somedoi","some source");
+        Assert.DoesNotThrow(cmd.Execute);
+        var founddataset = GetMockActivator().RepositoryLocator.CatalogueRepository.GetAllObjects<Rdmp.Core.Curation.Data.Dataset>().Where(ds => ds.Name == "dataset2" && ds.DigitalObjectIdentifier == "somedoi" && ds.Source == "some source").First();
+        Assert.That(founddataset,Is.Not.Null);
+    }
+}