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Sync develop changes August 21 - 27 to hdf5_1_14 #4774
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derobins
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HDFGroup:hdf5_1_14
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lrknox:sync_develop_changes_to_1_14
Aug 27, 2024
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1e02ff0
Use gfortran 14 for cmake-ctest.yml on mac (#4739)
hyoklee 28649f9
Fix enum type mismatch warning (#4741)
hyoklee 9f89469
Fix macro redefined warnings (#4744)
hyoklee c070b23
Update nvhpc CI version to 24.7 (#4740)
hyoklee 77444b8
Return basic HTTP range GET logging to ROS3 (#4738)
ajelenak 2c89149
Replace non-VOL calls with VOL calls - part 1 (#4745)
bmribler c3444df
Fix inconsistent documentation of get_name functions (#4715)
bmribler 4eba47a
Remove HDF-EOS5 CI action (#4750)
derobins f604a25
Replace non-VOL calls with VOL calls - part 2 (#4748)
bmribler 874e727
Restore rand_r in a few parallel tests (#4749)
derobins 77da105
Don't run AOCC parallel tests with -j2 (#4752)
derobins 3fa8ec0
Replace non-VOL calls with VOL calls - part 3 (#4756)
bmribler 2c7edff
Turn on parallel CI tests in Autotools & CMake (#4573)
derobins c456762
Fix typo in H5Centry.c (#4762)
hyoklee 9416801
Set/Unset VOL wrapping context in H5VL_attr_close (#4759)
jhendersonHDF e9663b5
Add missing C++ and Fortran to Intel oneAPI CI (#4761)
derobins 021d36a
Remove early test exit (#4757)
mattjala c5723db
Restore Julia CI (#4763)
derobins e5504ed
Capitalize f in (#4766)
hyoklee f8619f1
Add testing to NVHPC CI actions (CMake & Autotools) (#4760)
derobins 5136404
Fix typo in H5T_order_t enum (#4773)
derobins b0e01f0
Correct julia workflows name for hdf5_1_14 branch.
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,79 @@ | ||
name: hdf5 dev autotools julia | ||
|
||
on: | ||
workflow_call: | ||
inputs: | ||
build_mode: | ||
description: "release vs. debug build" | ||
required: true | ||
type: string | ||
|
||
permissions: | ||
contents: read | ||
|
||
jobs: | ||
julia_build_and_test: | ||
name: "julia ${{ inputs.build_mode }}" | ||
runs-on: ubuntu-latest | ||
steps: | ||
- name: Get Sources | ||
uses: actions/[email protected] | ||
|
||
- name: Install Dependencies | ||
shell: bash | ||
run: | | ||
sudo apt-get update | ||
sudo apt-get install autoconf automake libtool libtool-bin libaec-dev | ||
sudo apt-get install doxygen graphviz | ||
sudo apt install -y zlib1g-dev libcurl4-openssl-dev libjpeg-dev wget curl bzip2 | ||
sudo apt install -y m4 flex bison cmake libzip-dev openssl build-essential | ||
|
||
- name: Autotools Configure | ||
shell: bash | ||
run: | | ||
sh ./autogen.sh | ||
mkdir "${{ runner.workspace }}/build" | ||
cd "${{ runner.workspace }}/build" | ||
$GITHUB_WORKSPACE/configure \ | ||
--enable-build-mode=${{ inputs.build_mode }} \ | ||
--disable-fortran \ | ||
--enable-shared \ | ||
--disable-parallel \ | ||
--prefix=/tmp | ||
|
||
- name: Autotools Build | ||
shell: bash | ||
run: | | ||
make -j3 | ||
working-directory: ${{ runner.workspace }}/build | ||
|
||
- name: Install HDF5 | ||
shell: bash | ||
run: | | ||
make install | ||
working-directory: ${{ runner.workspace }}/build | ||
|
||
- name: Install julia | ||
uses: julia-actions/setup-julia@latest | ||
with: | ||
version: '1.6' | ||
arch: 'x64' | ||
|
||
- name: Get julia hdf5 source | ||
uses: actions/[email protected] | ||
with: | ||
repository: JuliaIO/HDF5.jl | ||
path: . | ||
|
||
- name: Generate LocalPreferences | ||
run: | | ||
echo '[HDF5]' >> LocalPreferences.toml | ||
echo 'libhdf5 = "/tmp/lib/libhdf5.so"' >> LocalPreferences.toml | ||
echo 'libhdf5_hl = "/tmp/lib/libhdf5_hl.so"' >> LocalPreferences.toml | ||
|
||
- uses: julia-actions/julia-buildpkg@latest | ||
|
||
- name: Julia Run Tests | ||
uses: julia-actions/julia-runtest@latest | ||
env: | ||
JULIA_DEBUG: Main |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,82 @@ | ||
name: hdf5 dev CMake julia | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. dev to 1.14 |
||
|
||
on: | ||
workflow_call: | ||
inputs: | ||
build_mode: | ||
description: "release vs. debug build" | ||
required: true | ||
type: string | ||
|
||
permissions: | ||
contents: read | ||
|
||
jobs: | ||
julia_build_and_test: | ||
name: "julia ${{ inputs.build_mode }}" | ||
runs-on: ubuntu-latest | ||
steps: | ||
- name: Get Sources | ||
uses: actions/[email protected] | ||
|
||
- name: Install Dependencies | ||
shell: bash | ||
run: | | ||
sudo apt-get update | ||
sudo apt-get install ninja-build doxygen graphviz | ||
sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev | ||
sudo apt install -y libaec-dev zlib1g-dev wget curl bzip2 flex bison cmake libzip-dev openssl build-essential | ||
|
||
- name: CMake Configure | ||
shell: bash | ||
run: | | ||
mkdir "${{ runner.workspace }}/build" | ||
cd "${{ runner.workspace }}/build" | ||
cmake -C $GITHUB_WORKSPACE/config/cmake/cacheinit.cmake -G Ninja \ | ||
-DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \ | ||
-DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \ | ||
-DHDF5_ENABLE_PARALLEL:BOOL=OFF \ | ||
-DHDF5_BUILD_CPP_LIB:BOOL=OFF \ | ||
-DLIBAEC_USE_LOCALCONTENT=OFF \ | ||
-DZLIB_USE_LOCALCONTENT=OFF \ | ||
-DHDF5_BUILD_FORTRAN:BOOL=OFF \ | ||
-DHDF5_BUILD_JAVA:BOOL=OFF \ | ||
-DCMAKE_INSTALL_PREFIX=/tmp \ | ||
$GITHUB_WORKSPACE | ||
|
||
- name: CMake Build | ||
shell: bash | ||
run: | | ||
cmake --build . --parallel 3 --config ${{ inputs.build_mode }} | ||
working-directory: ${{ runner.workspace }}/build | ||
|
||
- name: Install HDF5 | ||
shell: bash | ||
run: | | ||
cmake --install . | ||
working-directory: ${{ runner.workspace }}/build | ||
|
||
- name: Install julia | ||
uses: julia-actions/setup-julia@latest | ||
with: | ||
version: '1.6' | ||
arch: 'x64' | ||
|
||
- name: Get julia hdf5 source | ||
uses: actions/[email protected] | ||
with: | ||
repository: JuliaIO/HDF5.jl | ||
path: . | ||
|
||
- name: Generate LocalPreferences | ||
run: | | ||
echo '[HDF5]' >> LocalPreferences.toml | ||
echo 'libhdf5 = "/tmp/lib/libhdf5.so"' >> LocalPreferences.toml | ||
echo 'libhdf5_hl = "/tmp/lib/libhdf5_hl.so"' >> LocalPreferences.toml | ||
|
||
- uses: julia-actions/julia-buildpkg@latest | ||
|
||
- name: Julia Run Tests | ||
uses: julia-actions/julia-runtest@latest | ||
env: | ||
JULIA_DEBUG: Main |
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Original file line number | Diff line number | Diff line change |
---|---|---|
|
@@ -50,8 +50,9 @@ jobs: | |
- name: Get Sources | ||
uses: actions/[email protected] | ||
|
||
# AUTOTOOLS CONFIGURE | ||
- name: Autotools Configure | ||
env: | ||
NPROCS: 2 | ||
run: | | ||
sh ./autogen.sh | ||
mkdir "${{ runner.workspace }}/build" | ||
|
@@ -71,7 +72,28 @@ jobs: | |
--with-szlib=yes | ||
shell: bash | ||
|
||
# BUILD | ||
- name: Autotools Build | ||
run: make -j3 | ||
working-directory: ${{ runner.workspace }}/build | ||
|
||
# ph5diff tests are in the tools/tests directory so they will get run | ||
# here, so leave NPROCS set here as well | ||
- name: Autotools Run Tests | ||
env: | ||
NPROCS: 2 | ||
run: | | ||
cd test && make check -j2 && cd .. | ||
cd tools && make check -j2 && cd .. | ||
cd hl && make check -j2 && cd .. | ||
cd fortran/test && make check -j2 && cd ../.. | ||
working-directory: ${{ runner.workspace }}/build | ||
if: ${{ inputs.thread_safety == 'disable' }} | ||
|
||
- name: Autotools Run Parallel Tests | ||
env: | ||
NPROCS: 2 | ||
run: | | ||
cd testpar && make check && cd .. | ||
cd fortran/testpar && make check -j2 && cd ../.. | ||
working-directory: ${{ runner.workspace }}/build | ||
if: ${{ inputs.thread_safety == 'disable' }} |
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dev to 1.14