Sync develop changes since last sync to hdf5_1_14 #4019
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* Update upload- artifact to match download version * Correct form of action call
* Reorg and update options for doc and cmake config * Correct subfiling depends
* Reorg and update options for doc and cmake config * Correct subfiling depends * Add linux S3 binaries to GH published files * Correct path * Try reducing parallel jobs in tests * Change examples jobs for test from 8 to 4
…ool is not used here] (HDFGroup#3886) * autogen.sh: check directly for libtoolize instead of libtool [as libtool is not used here] * autogen.sh: simplify (g)libtoolize check - look for glibtoolize first - and then libtoolize
off_t is a 32-bit signed value on Windows, so we should use HDoff_t (which is __int64 on Windows) internally instead. Also defines HDftell on Windows to be _ftelli64().
Co-authored-by: Glenn Song <[email protected]>
* - Added Fortran APIs:
H5FGET_INTENT_F, H5SSELECT_ITER_CREATE_F, H5SSEL_ITER_GET_SEQ_LIST_F,
H5SSELECT_ITER_CLOSE_F, H5S_mp_H5SSELECT_ITER_RESET_F
- Added Fortran Parameters:
H5S_SEL_ITER_GET_SEQ_LIST_SORTED_F, H5S_SEL_ITER_SHARE_WITH_DATASPACE_F
- Added tests for new APIs
- Removed H5F C wrapper stubs
- Documentation misc. cleanup.
…p#3937) Add the user test program for committed types in HDFFV-9174
…DFGroup#3942) Remove cached datatype conversion path table entries on file close When performing datatype conversions during I/O, the library checks to see whether it can re-use a cached datatype conversion pathway by performing comparisons between the source and destination datatypes of the current operation and the source and destination datatypes associated with each cached datatype conversion pathway. For variable-length and reference datatypes, a comparison is made between the VOL object for the file associated with these datatypes, which may change as a file is closed and reopened. In workflows involving a loop that opens a file, performs I/O on an object with a variable-length or reference datatype and then closes the file, this can lead to constant memory usage growth as the library compares the file VOL objects between the datatypes as different and adds a new cached conversion pathway entry on each iteration during I/O. This is now fixed by clearing out any cached conversion pathway entries for variable-length or reference datatypes associated with a particular file when that file is closed.
* update H5Ssel_iter_reset_f test
…ocally as well (HDFGroup#3958) ATM configuration was embedded within the CI workflow but that makes impossible to use codespell locally since the tool would not find those settings. I moved them into .codespellrc but then also removed codespell.yml workflow from skips, added .git and in general makde it look for .dotfiles too
* Switch warnings as errors to default OFF * Enable mac docs * Add doxygen action uses step * Use html div around snippet * Allow preset name to be an argument to cmake-ctest.yml
* revert to using c-stub for _F08 MPI APIs * use mpi compiler wrappers for cmake and nvhpc
* fixed XL and Gfortran errors * fixed data type len array
…le line (HDFGroup#3954) * The issue was that the "allargs" variable was not being used in the final command of the compiler wrapper. Any entries containing an escaped quote (\", \') or other non-matching argument (*) would not be passed to the compile line. I have fixed this problem by ensuring all arguments passed to the compiler wrapper are now included in the compile line. * added testing for compiler wrappers
* Add binary test job * Correct names of jobs * Add build mode to binary names * Limit packaging execution * Make mac DragNDrop optional * Format if checks * fix checks for TS * Allow examples to be packaged * Correct if NOT format * Correct configure and workflow call * Separate out CMake/Autotools Parallel job * Correct binary examples path * Correct dir path for windows test * Correct paths and add extlibs * Windows binaries do not have a share folder
HDFGroup#3975) system tab difference.
…ler (HDFGroup#3976) * append '-WF,' when passing C preprocessor directives to the xlf compiler * strip path from compiler name
* The space difference in the Fortran examples must be fixed to match the expected output for compression filter examples.
* Enable mac tests * Add platform test workflows to examples
* Add other non-fortran lib abi reports * removing hl_cpp abi reports because of lack of public symbols
… match *autom4te* to release tar & zip files. (HDFGroup#4009) Filter messages with 'ulimit -s' out of test output for runTest.cmake.
* Update INSTALL_CMake.txt as necessary * Update remaining docs that use HDF5_USE_GNU_DIRS * Update options in HDFMacros in HDF5Examples
* Add partial compound io on attributes to API tests
byrnHDF
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This will need fixed for 1.14
byrnHDF
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This will need fixed for 1.14
byrnHDF
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This will need fixed for 1.14
byrnHDF
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This will need fixed for 1.14
byrnHDF
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byrnHDF
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