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[1.12 Merge]Hdf5 1 12 warnings fixes #1715

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merged 14 commits into from
May 3, 2022
Merged

[1.12 Merge]Hdf5 1 12 warnings fixes #1715

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c4d440a
Warnings fixes (#1680)
jhendersonHDF Apr 25, 2022
0c7a339
Clean stack size warnings in sio_engine (#1687)
derobins Apr 25, 2022
07838e2
Fixes stack size warnings in tcoords.c (#1688)
derobins Apr 25, 2022
c82e64f
Address some warnings from casting away of const (#1684)
jhendersonHDF Apr 26, 2022
6747175
Fixes stack size warnings in ntypes (#1695)
derobins Apr 26, 2022
16baf2e
Fixes stack size warnings in dtransform (#1696)
derobins Apr 27, 2022
f9b1495
Fixes stack size warnings in set_extent test (#1698)
derobins Apr 28, 2022
f3faae8
Be a bit safer with signed arithmetic, thus quieting some signed-over…
gnuoyd Apr 30, 2022
445a9f6
Fix object size warnings in cache.c test (#1701)
jhendersonHDF May 1, 2022
a615a2b
Fix some const cast and stack/static object size warnings (#1700)
jhendersonHDF May 1, 2022
20ea333
Stop lying about H5S_t const-ness (#1209)
derobins Nov 20, 2021
79bc4b8
Fix a few warnings after recent H5S const-related changes (#1225)
jhendersonHDF Nov 24, 2021
d060288
Adjustments for HDF5 1.12
jhendersonHDF May 2, 2022
fa87378
Merge branch 'hdf5_1_12' into hdf5_1_12_warnings_fixes
jhendersonHDF May 3, 2022
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10 changes: 5 additions & 5 deletions src/H5Bdbg.c
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Original file line number Diff line number Diff line change
Expand Up @@ -110,20 +110,20 @@ H5B_debug(H5F_t *f, haddr_t addr, FILE *stream, int indent, int fwidth, const H5
*/
for (u = 0; u < bt->nchildren; u++) {
HDfprintf(stream, "%*sChild %d...\n", indent, "", u);
HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent + 3, "", MAX(0, fwidth - 3),
HDfprintf(stream, "%*s%-*s %" PRIuHADDR "\n", indent + 3, "", MAX(3, fwidth) - 3,
"Address:", bt->child[u]);

/* If there is a key debugging routine, use it to display the left & right keys */
if (type->debug_key) {
/* Decode the 'left' key & print it */
HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3), "Left Key:");
HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(3, fwidth) - 3, "Left Key:");
HDassert(H5B_NKEY(bt, shared, u));
(void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6), H5B_NKEY(bt, shared, u), udata);
(void)(type->debug_key)(stream, indent + 6, MAX(6, fwidth) - 6, H5B_NKEY(bt, shared, u), udata);

/* Decode the 'right' key & print it */
HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3), "Right Key:");
HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(3, fwidth) - 3, "Right Key:");
HDassert(H5B_NKEY(bt, shared, u + 1));
(void)(type->debug_key)(stream, indent + 6, MAX(0, fwidth - 6), H5B_NKEY(bt, shared, u + 1),
(void)(type->debug_key)(stream, indent + 6, MAX(6, fwidth) - 6, H5B_NKEY(bt, shared, u + 1),
udata);
} /* end if */
} /* end for */
Expand Down
32 changes: 17 additions & 15 deletions src/H5C.c
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Original file line number Diff line number Diff line change
Expand Up @@ -4669,10 +4669,11 @@ H5C__autoadjust__ageout__cycle_epoch_marker(H5C_t *cache_ptr)
cache_ptr->epoch_marker_ringbuf_first =
(cache_ptr->epoch_marker_ringbuf_first + 1) % (H5C__MAX_EPOCH_MARKERS + 1);

if (cache_ptr->epoch_marker_ringbuf_size <= 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "ring buffer underflow")

cache_ptr->epoch_marker_ringbuf_size -= 1;

if (cache_ptr->epoch_marker_ringbuf_size < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "ring buffer underflow")
if ((cache_ptr->epoch_marker_active)[i] != TRUE)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unused marker in LRU?!?")

Expand All @@ -4692,11 +4693,11 @@ H5C__autoadjust__ageout__cycle_epoch_marker(H5C_t *cache_ptr)

(cache_ptr->epoch_marker_ringbuf)[cache_ptr->epoch_marker_ringbuf_last] = i;

cache_ptr->epoch_marker_ringbuf_size += 1;

if (cache_ptr->epoch_marker_ringbuf_size > H5C__MAX_EPOCH_MARKERS)
if (cache_ptr->epoch_marker_ringbuf_size >= H5C__MAX_EPOCH_MARKERS)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "ring buffer overflow")

cache_ptr->epoch_marker_ringbuf_size += 1;

H5C__DLL_PREPEND((&((cache_ptr->epoch_markers)[i])), (cache_ptr)->LRU_head_ptr, (cache_ptr)->LRU_tail_ptr,
(cache_ptr)->LRU_list_len, (cache_ptr)->LRU_list_size, (FAIL))
done:
Expand Down Expand Up @@ -4967,13 +4968,13 @@ H5C__autoadjust__ageout__insert_new_marker(H5C_t *cache_ptr)

(cache_ptr->epoch_marker_ringbuf)[cache_ptr->epoch_marker_ringbuf_last] = i;

cache_ptr->epoch_marker_ringbuf_size += 1;

if (cache_ptr->epoch_marker_ringbuf_size > H5C__MAX_EPOCH_MARKERS) {
if (cache_ptr->epoch_marker_ringbuf_size >= H5C__MAX_EPOCH_MARKERS) {

HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "ring buffer overflow")
}

cache_ptr->epoch_marker_ringbuf_size += 1;

H5C__DLL_PREPEND((&((cache_ptr->epoch_markers)[i])), (cache_ptr)->LRU_head_ptr, (cache_ptr)->LRU_tail_ptr,
(cache_ptr)->LRU_list_len, (cache_ptr)->LRU_list_size, (FAIL))

Expand Down Expand Up @@ -5021,11 +5022,11 @@ H5C__autoadjust__ageout__remove_all_markers(H5C_t *cache_ptr)
cache_ptr->epoch_marker_ringbuf_first =
(cache_ptr->epoch_marker_ringbuf_first + 1) % (H5C__MAX_EPOCH_MARKERS + 1);

cache_ptr->epoch_marker_ringbuf_size -= 1;

if (cache_ptr->epoch_marker_ringbuf_size < 0)
if (cache_ptr->epoch_marker_ringbuf_size <= 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "ring buffer underflow")

cache_ptr->epoch_marker_ringbuf_size -= 1;

if ((cache_ptr->epoch_marker_active)[i] != TRUE)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unused marker in LRU?!?")

Expand Down Expand Up @@ -5094,10 +5095,11 @@ H5C__autoadjust__ageout__remove_excess_markers(H5C_t *cache_ptr)
cache_ptr->epoch_marker_ringbuf_first =
(cache_ptr->epoch_marker_ringbuf_first + 1) % (H5C__MAX_EPOCH_MARKERS + 1);

if (cache_ptr->epoch_marker_ringbuf_size <= 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "ring buffer underflow")

cache_ptr->epoch_marker_ringbuf_size -= 1;

if (cache_ptr->epoch_marker_ringbuf_size < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "ring buffer underflow")
if ((cache_ptr->epoch_marker_active)[i] != TRUE)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "unused marker in LRU?!?")

Expand Down Expand Up @@ -5525,8 +5527,8 @@ H5C__flush_invalidate_ring(H5F_t *f, H5C_ring_t ring, unsigned flags)
hbool_t restart_slist_scan;
uint32_t protected_entries = 0;
int32_t i;
int32_t cur_ring_pel_len;
int32_t old_ring_pel_len;
uint32_t cur_ring_pel_len;
uint32_t old_ring_pel_len;
unsigned cooked_flags;
unsigned evict_flags;
H5SL_node_t * node_ptr = NULL;
Expand Down
5 changes: 3 additions & 2 deletions src/H5Cimage.c
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Original file line number Diff line number Diff line change
Expand Up @@ -2690,10 +2690,11 @@ H5C__prep_for_file_close__setup_image_entries_array(H5C_t *cache_ptr)
*/
if (entry_ptr->type->id == H5AC_PREFETCHED_ENTRY_ID) {
image_entries[u].type_id = entry_ptr->prefetch_type_id;
image_entries[u].age = entry_ptr->age + 1;

if (image_entries[u].age > H5AC__CACHE_IMAGE__ENTRY_AGEOUT__MAX)
if (entry_ptr->age >= H5AC__CACHE_IMAGE__ENTRY_AGEOUT__MAX)
image_entries[u].age = H5AC__CACHE_IMAGE__ENTRY_AGEOUT__MAX;
else
image_entries[u].age = entry_ptr->age + 1;
} /* end if */
else {
image_entries[u].type_id = entry_ptr->type->id;
Expand Down
84 changes: 38 additions & 46 deletions src/H5Dchunk.c
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Original file line number Diff line number Diff line change
Expand Up @@ -257,14 +257,13 @@ typedef struct H5D_chunk_coll_fill_info_t {
static herr_t H5D__chunk_construct(H5F_t *f, H5D_t *dset);
static herr_t H5D__chunk_init(H5F_t *f, const H5D_t *dset, hid_t dapl_id);
static herr_t H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info,
hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space,
H5D_chunk_map_t *fm);
hsize_t nelmts, H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm);
static herr_t H5D__chunk_io_init_selections(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info,
H5D_chunk_map_t *fm);
static herr_t H5D__chunk_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts,
const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *fm);
H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm);
static herr_t H5D__chunk_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts,
const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *fm);
H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm);
static herr_t H5D__chunk_flush(H5D_t *dset);
static herr_t H5D__chunk_io_term(const H5D_chunk_map_t *fm);
static herr_t H5D__chunk_dest(H5D_t *dset);
Expand Down Expand Up @@ -1061,7 +1060,7 @@ H5D__chunk_is_data_cached(const H5D_shared_t *shared_dset)
*/
static herr_t
H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t nelmts,
const H5S_t *file_space, const H5S_t *mem_space, H5D_chunk_map_t *fm)
H5S_t *file_space, H5S_t *mem_space, H5D_chunk_map_t *fm)
{
const H5D_t *dataset = io_info->dset; /* Local pointer to dataset info */
hssize_t old_offset[H5O_LAYOUT_NDIMS]; /* Old selection offset */
Expand Down Expand Up @@ -1092,7 +1091,7 @@ H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf
* speed up hyperslab calculations by removing the extra checks and/or
* additions involving the offset and the hyperslab selection -QAK)
*/
if ((file_space_normalized = H5S_hyper_normalize_offset((H5S_t *)file_space, old_offset)) < 0)
if ((file_space_normalized = H5S_hyper_normalize_offset(file_space, old_offset)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "unable to normalize selection")

/* Decide the number of chunks in each dimension */
Expand Down Expand Up @@ -1129,8 +1128,7 @@ H5D__chunk_io_init(const H5D_io_info_t *io_info, const H5D_type_info_t *type_inf
fm->mem_space = NULL;

if (file_space_normalized == TRUE)
if (H5S_hyper_denormalize_offset((H5S_t *)file_space, old_offset) <
0) /* (Casting away const OK -QAK) */
if (H5S_hyper_denormalize_offset(file_space, old_offset) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't denormalize selection")

FUNC_LEAVE_NOAPI(ret_value)
Expand Down Expand Up @@ -1357,15 +1355,16 @@ H5D__chunk_io_init_selections(const H5D_io_info_t *io_info, const H5D_type_info_
*-------------------------------------------------------------------------
*/
void *
H5D__chunk_mem_alloc(size_t size, const H5O_pline_t *pline)
H5D__chunk_mem_alloc(size_t size, void *pline)
{
void *ret_value = NULL; /* Return value */
H5O_pline_t *_pline = (H5O_pline_t *)pline;
void * ret_value = NULL; /* Return value */

FUNC_ENTER_STATIC_NOERR

HDassert(size);

if (pline && pline->nused)
if (_pline && _pline->nused)
ret_value = H5MM_malloc(size);
else
ret_value = H5FL_BLK_MALLOC(chunk, size);
Expand All @@ -1388,14 +1387,14 @@ H5D__chunk_mem_alloc(size_t size, const H5O_pline_t *pline)
*-------------------------------------------------------------------------
*/
void *
H5D__chunk_mem_xfree(void *chk, const void *_pline)
H5D__chunk_mem_xfree(void *chk, const void *pline)
{
const H5O_pline_t *pline = (const H5O_pline_t *)_pline;
const H5O_pline_t *_pline = (const H5O_pline_t *)pline;

FUNC_ENTER_STATIC_NOERR

if (chk) {
if (pline && pline->nused)
if (_pline && _pline->nused)
H5MM_xfree(chk);
else
chk = H5FL_BLK_FREE(chunk, chk);
Expand All @@ -1412,9 +1411,9 @@ H5D__chunk_mem_xfree(void *chk, const void *_pline)
*-------------------------------------------------------------------------
*/
void
H5D__chunk_mem_free(void *chk, const void *_pline)
H5D__chunk_mem_free(void *chk, void *pline)
{
(void)H5D__chunk_mem_xfree(chk, _pline);
(void)H5D__chunk_mem_xfree(chk, pline);
}

/*-------------------------------------------------------------------------
Expand Down Expand Up @@ -1566,8 +1565,7 @@ H5D__create_chunk_map_single(H5D_chunk_map_t *fm, const H5D_io_info_t
chunk_info->fspace_shared = TRUE;

/* Just point at the memory dataspace & selection */
/* (Casting away const OK -QAK) */
chunk_info->mspace = (H5S_t *)fm->mem_space;
chunk_info->mspace = fm->mem_space;

/* Indicate that the chunk's memory dataspace is shared */
chunk_info->mspace_shared = TRUE;
Expand Down Expand Up @@ -1842,7 +1840,6 @@ H5D__create_chunk_file_map_hyper(H5D_chunk_map_t *fm, const H5D_io_info_t
/* Iterate through each chunk in the dataset */
while (sel_points) {
/* Check for intersection of current chunk and file selection */
/* (Casting away const OK - QAK) */
if (TRUE == H5S_SELECT_INTERSECT_BLOCK(fm->file_space, coords, end)) {
H5D_chunk_info_t *new_chunk_info; /* chunk information to insert into skip list */
hsize_t chunk_points; /* Number of elements in chunk selection */
Expand Down Expand Up @@ -2001,8 +1998,7 @@ H5D__create_chunk_mem_map_hyper(const H5D_chunk_map_t *fm)
HDassert(chunk_info);

/* Just point at the memory dataspace & selection */
/* (Casting away const OK -QAK) */
chunk_info->mspace = (H5S_t *)fm->mem_space;
chunk_info->mspace = fm->mem_space;

/* Indicate that the chunk's memory space is shared */
chunk_info->mspace_shared = TRUE;
Expand Down Expand Up @@ -2124,8 +2120,7 @@ H5D__create_chunk_mem_map_1d(const H5D_chunk_map_t *fm)
HDassert(chunk_info);

/* Just point at the memory dataspace & selection */
/* (Casting away const OK -QAK) */
chunk_info->mspace = (H5S_t *)fm->mem_space;
chunk_info->mspace = fm->mem_space;

/* Indicate that the chunk's memory space is shared */
chunk_info->mspace_shared = TRUE;
Expand Down Expand Up @@ -2467,8 +2462,7 @@ H5D__chunk_cacheable(const H5D_io_info_t *io_info, haddr_t caddr, hbool_t write_
*/
static herr_t
H5D__chunk_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t H5_ATTR_UNUSED nelmts,
const H5S_t H5_ATTR_UNUSED *file_space, const H5S_t H5_ATTR_UNUSED *mem_space,
H5D_chunk_map_t *fm)
H5S_t H5_ATTR_UNUSED *file_space, H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t *fm)
{
H5SL_node_t * chunk_node; /* Current node in chunk skip list */
H5D_io_info_t nonexistent_io_info; /* "nonexistent" I/O info object */
Expand Down Expand Up @@ -2618,8 +2612,7 @@ H5D__chunk_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_
*/
static herr_t
H5D__chunk_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info, hsize_t H5_ATTR_UNUSED nelmts,
const H5S_t H5_ATTR_UNUSED *file_space, const H5S_t H5_ATTR_UNUSED *mem_space,
H5D_chunk_map_t *fm)
H5S_t H5_ATTR_UNUSED *file_space, H5S_t H5_ATTR_UNUSED *mem_space, H5D_chunk_map_t *fm)
{
H5SL_node_t * chunk_node; /* Current node in chunk skip list */
H5D_io_info_t ctg_io_info; /* Contiguous I/O info object */
Expand Down Expand Up @@ -3716,11 +3709,11 @@ H5D__chunk_cache_prune(const H5D_t *dset, size_t size)
static void *
H5D__chunk_lock(const H5D_io_info_t *io_info, H5D_chunk_ud_t *udata, hbool_t relax, hbool_t prev_unfilt_chunk)
{
const H5D_t * dset = io_info->dset; /* Local pointer to the dataset info */
const H5O_pline_t *pline =
const H5D_t *dset = io_info->dset; /* Local pointer to the dataset info */
H5O_pline_t *pline =
&(dset->shared->dcpl_cache
.pline); /* I/O pipeline info - always equal to the pline passed to H5D__chunk_mem_alloc */
const H5O_pline_t * old_pline = pline; /* Old pipeline, i.e. pipeline used to read the chunk */
H5O_pline_t * old_pline = pline; /* Old pipeline, i.e. pipeline used to read the chunk */
const H5O_layout_t *layout = &(dset->shared->layout); /* Dataset layout */
const H5O_fill_t * fill = &(dset->shared->dcpl_cache.fill); /* Fill value info */
H5D_fill_buf_info_t fb_info; /* Dataset's fill buffer info */
Expand Down Expand Up @@ -4300,18 +4293,18 @@ H5D__chunk_allocate(const H5D_io_info_t *io_info, hbool_t full_overwrite, const
coordinates) */
hsize_t max_unalloc[H5O_LAYOUT_NDIMS]; /* Last chunk in each dimension that is unallocated (in scaled
coordinates) */
hsize_t scaled[H5O_LAYOUT_NDIMS]; /* Offset of current chunk (in scaled coordinates) */
size_t orig_chunk_size; /* Original size of chunk in bytes */
size_t chunk_size; /* Actual size of chunk in bytes, possibly filtered */
unsigned filter_mask = 0; /* Filter mask for chunks that have them */
const H5O_layout_t *layout = &(dset->shared->layout); /* Dataset layout */
const H5O_pline_t * pline = &(dset->shared->dcpl_cache.pline); /* I/O pipeline info */
const H5O_pline_t def_pline = H5O_CRT_PIPELINE_DEF; /* Default pipeline */
const H5O_fill_t * fill = &(dset->shared->dcpl_cache.fill); /* Fill value info */
H5D_fill_value_t fill_status; /* The fill value status */
hbool_t should_fill = FALSE; /* Whether fill values should be written */
void * unfilt_fill_buf = NULL; /* Unfiltered fill value buffer */
void ** fill_buf = NULL; /* Pointer to the fill buffer to use for a chunk */
hsize_t scaled[H5O_LAYOUT_NDIMS]; /* Offset of current chunk (in scaled coordinates) */
size_t orig_chunk_size; /* Original size of chunk in bytes */
size_t chunk_size; /* Actual size of chunk in bytes, possibly filtered */
unsigned filter_mask = 0; /* Filter mask for chunks that have them */
H5O_layout_t * layout = &(dset->shared->layout); /* Dataset layout */
H5O_pline_t * pline = &(dset->shared->dcpl_cache.pline); /* I/O pipeline info */
H5O_pline_t def_pline = H5O_CRT_PIPELINE_DEF; /* Default pipeline */
const H5O_fill_t *fill = &(dset->shared->dcpl_cache.fill); /* Fill value info */
H5D_fill_value_t fill_status; /* The fill value status */
hbool_t should_fill = FALSE; /* Whether fill values should be written */
void * unfilt_fill_buf = NULL; /* Unfiltered fill value buffer */
void ** fill_buf = NULL; /* Pointer to the fill buffer to use for a chunk */
#ifdef H5_HAVE_PARALLEL
hbool_t blocks_written = FALSE; /* Flag to indicate that chunk was actually written */
hbool_t using_mpi =
Expand Down Expand Up @@ -4416,10 +4409,9 @@ H5D__chunk_allocate(const H5D_io_info_t *io_info, hbool_t full_overwrite, const
if (should_fill) {
/* Initialize the fill value buffer */
/* (delay allocating fill buffer for VL datatypes until refilling) */
/* (casting away const OK - QAK) */
if (H5D__fill_init(&fb_info, NULL, (H5MM_allocate_t)H5D__chunk_mem_alloc, (void *)pline,
(H5MM_free_t)H5D__chunk_mem_free, (void *)pline, &dset->shared->dcpl_cache.fill,
dset->shared->type, dset->shared->type_id, (size_t)0, orig_chunk_size) < 0)
if (H5D__fill_init(&fb_info, NULL, H5D__chunk_mem_alloc, pline, H5D__chunk_mem_free, pline,
&dset->shared->dcpl_cache.fill, dset->shared->type, dset->shared->type_id,
(size_t)0, orig_chunk_size) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't initialize fill buffer info")
fb_info_init = TRUE;

Expand Down
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