Merge branch 'develop' into feature/new_datatypes

HDFGroup · Mar 16, 2024 · 844172a · 844172a
2 parents 4320d92 + 6d85ea2
commit 844172a
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diff --git a/.github/workflows/aocc-ompi-auto.yml → .github/workflows/aocc-auto.yml b/.github/workflows/aocc-ompi-auto.yml → .github/workflows/aocc-auto.yml
@@ -16,9 +16,10 @@ jobs:
     name: "aocc ${{ inputs.build_mode }}"
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/[email protected]
+      - name: Get Sources
+        uses: actions/[email protected]
 
-      - name: Install Linux dependencies
+      - name: Install Dependencies
         shell: bash
         run: |
           sudo apt update
@@ -28,6 +29,7 @@ jobs:
           sudo apt install -y m4 flex bison cmake libzip-dev openssl build-essential
 
       - name: Install AOCC 4.1.0
+        shell: bash
         run: |
           wget https://download.amd.com/developer/eula/aocc/aocc-4-1/aocc-compiler-4.1.0.tar
           tar -xvf aocc-compiler-4.1.0.tar
@@ -74,7 +76,6 @@ jobs:
             LDFLAGS="-L/home/runner/work/hdf5/hdf5/aocc-compiler-4.1.0/lib \
             -L/home/runner/work/hdf5/hdf5/openmpi-4.1.5-install/lib"
 
-      # BUILD
       - name: Autotools Build
         shell: bash
         env:
@@ -84,8 +85,6 @@ jobs:
           make -j3
         working-directory: ${{ runner.workspace }}/build
 
-      # RUN TESTS
-      # NORMAL
       - name: Autotools Run Tests
         env:
           NPROCS: 2
@@ -94,7 +93,6 @@ jobs:
           make check -j
         working-directory: ${{ runner.workspace }}/build
 
-      # INSTALL (note that this runs even when we don't run the tests)
       - name: Autotools Install
         env:
           NPROCS: 2

diff --git a/.github/workflows/aocc-ompi-cmake.yml → .github/workflows/aocc-cmake.yml b/.github/workflows/aocc-ompi-cmake.yml → .github/workflows/aocc-cmake.yml
@@ -16,9 +16,10 @@ jobs:
     name: "aocc ${{ inputs.build_mode }}"
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/[email protected]
+      - name: Get Sources
+        uses: actions/[email protected]
 
-      - name: Install Linux dependencies
+      - name: Install Dependencies
         shell: bash
         run: |
           sudo apt update
@@ -28,6 +29,7 @@ jobs:
           sudo apt install -y m4 flex bison cmake libzip-dev openssl build-essential
 
       - name: Install AOCC 4.1.0
+        shell: bash
         run: |
           wget https://download.amd.com/developer/eula/aocc/aocc-4-1/aocc-compiler-4.1.0.tar
           tar -xvf aocc-compiler-4.1.0.tar
@@ -56,7 +58,7 @@ jobs:
           make
           make install
 
-      - name: CMake Configure with aocc
+      - name: CMake Configure
         shell: bash
         run: |
           export LD_LIBRARY_PATH=/home/runner/work/hdf5/hdf5/aocc-compiler-4.1.0/lib:/home/runner/work/hdf5/hdf5/openmpi-4.1.5-install/lib:/usr/local/lib
@@ -77,14 +79,12 @@ jobs:
           $GITHUB_WORKSPACE
           #cat src/libhdf5.settings
 
-      # BUILD
       - name: CMake Build
         shell: bash
         run: |
           cmake --build . --parallel 3 --config ${{ inputs.build_mode }}
         working-directory: ${{ runner.workspace }}/build
 
-      # RUN TESTS
       - name: CMake Run Tests
         shell: bash
         run: |

diff --git a/.github/workflows/autotools.yml b/.github/workflows/autotools.yml
@@ -73,6 +73,14 @@ jobs:
 
     call-release-auto-aocc:
       name: "Autotools aocc Workflows"
-      uses: ./.github/workflows/aocc-ompi-auto.yml
+      uses: ./.github/workflows/aocc-auto.yml
       with:
             build_mode: "production"
+
+    call-release-auto-cygwin:
+      name: "Autotools Cygwin Workflows"
+      uses: ./.github/workflows/cygwin-auto.yml
+      with:
+            build_mode: "production"
+
+
diff --git a/.github/workflows/cmake.yml b/.github/workflows/cmake.yml
@@ -75,7 +75,14 @@ jobs:
             build_mode: "Release"
 
     call-release-cmake-aocc:
-        name: "CMake nvhpc Workflows"
-        uses: ./.github/workflows/aocc-ompi-cmake.yml
+        name: "CMake aocc Workflows"
+        uses: ./.github/workflows/aocc-cmake.yml
+        with:
+            build_mode: "Release"
+
+    call-release-cmake-cygwin:
+        name: "CMake Cygwin Workflows"
+        uses: ./.github/workflows/cygwin-cmake.yml
         with:
             build_mode: "Release"
+
diff --git a/.github/workflows/cygwin-auto.yml b/.github/workflows/cygwin-auto.yml
@@ -0,0 +1,62 @@
+name: hdf5 dev autotools cygwin
+
+on:
+  workflow_call:
+    inputs:
+      build_mode:
+        description: "release vs. debug build"
+        required: true
+        type: string
+
+permissions:
+  contents: read
+
+jobs:
+  cygwin_build_and_test:
+    name: "cygwin ${{ inputs.build_mode }}"
+    runs-on: windows-latest
+    steps:
+      - name: Set git to use LF
+        run: |
+          git config --global core.autocrlf input
+
+      - name: Get Sources
+        uses: actions/[email protected]
+
+      - name: Install Cygwin
+        uses: cygwin/cygwin-install-action@master
+        with:
+          packages: autoconf automake make gcc-fortran libtool zlib-devel m4 flex bison perl
+
+      - name: Autotools Configure
+        shell: C:\cygwin\bin\bash.exe -eo pipefail -o igncr '{0}'
+        run: |
+          export PATH=/usr/bin:$PATH
+          sh ./autogen.sh
+          mkdir build
+          cd build
+          ../configure \
+            --enable-build-mode=${{ inputs.build_mode }} \
+            --enable-shared \
+            --enable-fortran
+
+      - name: Autotools Build
+        shell: C:\cygwin\bin\bash.exe -eo pipefail -o igncr '{0}'
+        run: |
+          export PATH=/usr/bin:$PATH
+          cd build
+          make -j3
+
+      - name: Autotools Run Tests
+        shell: C:\cygwin\bin\bash.exe -eo pipefail -o igncr '{0}'
+        run: |
+          export PATH=/usr/bin:$PATH
+          cd build
+#          make check -j ---- cache test fails
+
+      - name: Autotools Install
+        shell: C:\cygwin\bin\bash.exe -eo pipefail -o igncr '{0}'
+        run: |
+          export PATH=/usr/bin:$PATH
+          cd build
+          make install
diff --git a/.github/workflows/cygwin-cmake.yml b/.github/workflows/cygwin-cmake.yml
@@ -0,0 +1,63 @@
+name: hdf5 dev CMake cygwin
+
+on:
+  workflow_call:
+    inputs:
+      build_mode:
+        description: "release vs. debug build"
+        required: true
+        type: string
+
+permissions:
+  contents: read
+
+jobs:
+  cygwin_build_and_test:
+    name: "cygwin-${{ inputs.build_mode }}"
+    runs-on: windows-latest
+    steps:
+      - name: Set git to use LF
+        run: |
+          git config --global core.autocrlf input
+
+      - name: Get Sources
+        uses: actions/[email protected]
+
+      - name: Install Cygwin
+        uses: cygwin/cygwin-install-action@master
+        with:
+          packages: cmake gcc-fortran make ninja zlib-devel flex bison perl
+
+      - name: CMake Configure
+        shell: C:\cygwin\bin\bash.exe -eo pipefail -o igncr '{0}'
+        run: |
+          export PATH=/usr/bin:$PATH
+          mkdir build
+          cd build
+          cmake -C ../config/cmake/cacheinit.cmake \
+            -G Ninja \
+            --log-level=VERBOSE \
+            -DCMAKE_BUILD_TYPE=${{ inputs.build_mode }} \
+            -DBUILD_SHARED_LIBS:BOOL=OFF \
+            -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF \
+            -DHDF5_BUILD_CPP_LIB:BOOL=OFF \
+            -DLIBAEC_USE_LOCALCONTENT=OFF \
+            -DZLIB_USE_LOCALCONTENT=OFF \
+            -DHDF5_BUILD_FORTRAN:BOOL=ON \
+            -DHDF5_BUILD_JAVA:BOOL=OFF \
+            ..
+
+      - name: CMake Build
+        shell: C:\cygwin\bin\bash.exe -eo pipefail -o igncr '{0}'
+        run: |
+          export PATH=/usr/bin:$PATH
+          cd build
+          cmake --build . --parallel 3 --config ${{ inputs.build_mode }}
+
+      - name: CMake Run Tests
+        shell: C:\cygwin\bin\bash.exe -eo pipefail -o igncr '{0}'
+        run: |
+           export PATH=/usr/bin:$PATH
+           cd build
+           ctest . --parallel 2 -C ${{ inputs.build_mode }} -V
+#           ctest . --parallel 2 -C ${{ inputs.build_mode }} -V -R "FORTRAN|H5TEST"
diff --git a/.github/workflows/intel-auto.yml b/.github/workflows/intel-auto.yml
@@ -1,4 +1,4 @@
-name: hdf5 dev autotools icx CI
+name: hdf5 dev autotools icx
 
 on:
   workflow_call:
@@ -12,49 +12,33 @@ permissions:
   contents: read
 
 jobs:
-  Intel_build_and_test:
-    name: "Intel ${{ inputs.build_mode }}"
+  intel_oneapi_linux:
+    name: "linux-oneapi ${{ inputs.build_mode }}"
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/[email protected]
+      - name: Get Sources
+        uses: actions/[email protected]
 
       - name: Install Dependencies
+        shell: bash
         run: |
           sudo apt-get update
           sudo apt-get install autoconf automake libtool libtool-bin libaec-dev
 
-      - name: Add oneAPI to apt
-        shell: bash
-        run: |
-          cd /tmp
-          wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
-          sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
-          rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
-          sudo add-apt-repository -y "deb https://apt.repos.intel.com/oneapi all main"
-      
-      - name: Install oneAPI dpcpp and fortran compiler
-        shell: bash
-        run: |
-          sudo apt update
-          sudo apt install -y intel-oneapi-compiler-dpcpp-cpp
-          sudo apt install -y intel-oneapi-compiler-fortran
-          sudo apt install -y intel-oneapi-mpi-devel
-          sudo apt-get install doxygen graphviz
-          sudo apt install libssl3 libssl-dev libcurl4 libcurl4-openssl-dev
-          echo "CC=icx" >> $GITHUB_ENV
-          echo "CXX=icpx" >> $GITHUB_ENV
-          echo "FC=ifx" >> $GITHUB_ENV
-
-      - name: Install oneAPI MKL library
-        shell: bash
-        run: |
-          sudo apt install -y intel-oneapi-mkl-devel
+      - name: Install oneAPI (Linux)
+        uses: fortran-lang/setup-fortran@v1
+        id: setup-fortran
+        with:
+          compiler: intel
+          version: '2024.0'
 
       - name: Autotools Configure
         shell: bash
+        env:
+          FC: ${{ steps.setup-fortran.outputs.fc }}
+          CC: ${{ steps.setup-fortran.outputs.cc }}
+          CXX: ${{ steps.setup-fortran.outputs.cxx }}
         run: |
-          source /opt/intel/oneapi/setvars.sh
-          export PATH=$PATH:/opt/intel/oneapi/compiler/2023.2.1/linux/bin
           sh ./autogen.sh
           mkdir "${{ runner.workspace }}/build"
           cd "${{ runner.workspace }}/build"
@@ -63,37 +47,42 @@ jobs:
             --enable-shared \
             --disable-fortran
 
-      # BUILD
       - name: Autotools Build
+        shell: bash
+        env:
+          FC: ${{ steps.setup-fortran.outputs.fc }}
+          CC: ${{ steps.setup-fortran.outputs.cc }}
+          CXX: ${{ steps.setup-fortran.outputs.cxx }}
         run: |
-          source /opt/intel/oneapi/setvars.sh
-          export PATH=$PATH:/opt/intel/oneapi/compiler/2023.2.1/linux/bin
           make -j3
         working-directory: ${{ runner.workspace }}/build
 
-      # RUN TESTS
-      # NORMAL
       - name: Autotools Run Tests
+        shell: bash
+        env:
+          FC: ${{ steps.setup-fortran.outputs.fc }}
+          CC: ${{ steps.setup-fortran.outputs.cc }}
+          CXX: ${{ steps.setup-fortran.outputs.cxx }}
         run: |
-          source /opt/intel/oneapi/setvars.sh
-          export PATH=$PATH:/opt/intel/oneapi/compiler/2023.2.1/linux/bin
-          export SYCL_DEVICE_FILTER=opencl.cpu
           make check -j2
         working-directory: ${{ runner.workspace }}/build
 
-      # INSTALL (note that this runs even when we don't run the tests)
       - name: Autotools Install
+        shell: bash
+        env:
+          FC: ${{ steps.setup-fortran.outputs.fc }}
+          CC: ${{ steps.setup-fortran.outputs.cc }}
+          CXX: ${{ steps.setup-fortran.outputs.cxx }}
         run: |
-          source /opt/intel/oneapi/setvars.sh
-          export PATH=$PATH:/opt/intel/oneapi/compiler/2023.2.1/linux/bin
-          export SYCL_DEVICE_FILTER=opencl.cpu
           make install
         working-directory: ${{ runner.workspace }}/build
 
       - name: Autotools Verify Install
+        shell: bash
+        env:
+          FC: ${{ steps.setup-fortran.outputs.fc }}
+          CC: ${{ steps.setup-fortran.outputs.cc }}
+          CXX: ${{ steps.setup-fortran.outputs.cxx }}
         run: |
-          source /opt/intel/oneapi/setvars.sh
-          export PATH=$PATH:/opt/intel/oneapi/compiler/2023.2.1/linux/bin
-          export SYCL_DEVICE_FILTER=opencl.cpu
           make check-install
         working-directory: ${{ runner.workspace }}/build