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A feature I was missing from gnome-terminal. Like prompt_on_quit, but for individual terminals. Values are "never" (default), "with process running", and "always".
Additionally, if set to "with process running", the quit-prompt will be shown
when quitting Guake if there are any subprocesses running. If set to "always",
it essentially overrides the prompt_on_quit option.
The option is in the GUI as a dropdown, just above prompt_on_quit. prompt_on_quit now behaves more a sub-option of prompt_on_close_tab.
If one of the two prompts is open (close tab or quit Guake) and the other opens, the first will be destroyed. Otherwise I found Guake wouldn't quit until the close-tab prompt was dismissed.
I changed the prompt text slightly; it includes the number of tabs open when quitting.
Please let me know what you think if you get a chance :)