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Updated the changes for the optimizer a bit.
The main important changes are: - I added some instance checkes (just to make sure that we do the right thing) that the type checker can never verify. - I also removed most of the accesses to `_pipeline_results` with regards to `StateReachability` as I realized that it was not working anyway. Instead I turned them into TODOs that we must address at some point. However, I think they are not so pressing because our state machines are usually quite small.
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