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Remove the prefix of gtf file #460

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Remove the prefix "extended_annotations" of output gtf files

@SuiYue-2308 SuiYue-2308 requested a review from cying111 January 27, 2025 06:03
@SuiYue-2308 SuiYue-2308 linked an issue Feb 7, 2025 that may be closed by this pull request
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Document the changes of write and import bambu result
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