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Merge remote-tracking branch 'upstream/main' into corr-bug
* upstream/main: (86 commits) Fixed a mispelling of dimension in dataarray documentation for from_dict (pydata#6020) [pre-commit.ci] pre-commit autoupdate (pydata#6014) [pre-commit.ci] pre-commit autoupdate (pydata#5990) Use set_options for asv bottleneck tests (pydata#5986) Fix module name retrieval in `backend.plugins.remove_duplicates()`, plugin tests (pydata#5959) Check for py version instead of try/except when importing entry_points (pydata#5988) Add "see also" in to_dataframe docs (pydata#5978) Alternate method using inline css to hide regular html output in an untrusted notebook (pydata#5880) Fix mypy issue with entry_points (pydata#5979) Remove pre-commit auto update (pydata#5958) Do not change coordinate inplace when throwing error (pydata#5957) Create CITATION.cff (pydata#5956) Add groupby & resample benchmarks (pydata#5922) Fix plot.line crash for data of shape (1, N) in _title_for_slice on format_item (pydata#5948) Disable unit test comments (pydata#5946) Publish test results from workflow_run only (pydata#5947) Generator for groupby reductions (pydata#5871) whats-new dev whats-new for 0.20.1 (pydata#5943) Docs: fix URL for PTSA (pydata#5935) ...
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,74 @@ | ||
| name: Benchmark | ||
|
|
||
| on: | ||
| pull_request: | ||
| types: [opened, reopened, synchronize, labeled] | ||
| workflow_dispatch: | ||
|
|
||
| jobs: | ||
| benchmark: | ||
| if: ${{ contains( github.event.pull_request.labels.*.name, 'run-benchmark') && github.event_name == 'pull_request' || github.event_name == 'workflow_dispatch' }} | ||
| name: Linux | ||
| runs-on: ubuntu-20.04 | ||
| env: | ||
| ASV_DIR: "./asv_bench" | ||
|
|
||
| steps: | ||
| # We need the full repo to avoid this issue | ||
| # https://github.com/actions/checkout/issues/23 | ||
| - uses: actions/checkout@v2 | ||
| with: | ||
| fetch-depth: 0 | ||
|
|
||
| - name: Setup Miniconda | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| # installer-url: https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh | ||
| installer-url: https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh | ||
|
|
||
| - name: Setup some dependencies | ||
| shell: bash -l {0} | ||
| run: | | ||
| pip install asv | ||
| sudo apt-get update -y | ||
| - name: Run benchmarks | ||
| shell: bash -l {0} | ||
| id: benchmark | ||
| env: | ||
| OPENBLAS_NUM_THREADS: 1 | ||
| MKL_NUM_THREADS: 1 | ||
| OMP_NUM_THREADS: 1 | ||
| ASV_FACTOR: 1.5 | ||
| ASV_SKIP_SLOW: 1 | ||
| run: | | ||
| set -x | ||
| # ID this runner | ||
| asv machine --yes | ||
| echo "Baseline: ${{ github.event.pull_request.base.sha }} (${{ github.event.pull_request.base.label }})" | ||
| echo "Contender: ${GITHUB_SHA} (${{ github.event.pull_request.head.label }})" | ||
| # Use mamba for env creation | ||
| # export CONDA_EXE=$(which mamba) | ||
| export CONDA_EXE=$(which conda) | ||
| # Run benchmarks for current commit against base | ||
| ASV_OPTIONS="--split --show-stderr --factor $ASV_FACTOR" | ||
| asv continuous $ASV_OPTIONS ${{ github.event.pull_request.base.sha }} ${GITHUB_SHA} \ | ||
| | sed "/Traceback \|failed$\|PERFORMANCE DECREASED/ s/^/::error::/" \ | ||
| | tee benchmarks.log | ||
| # Report and export results for subsequent steps | ||
| if grep "Traceback \|failed\|PERFORMANCE DECREASED" benchmarks.log > /dev/null ; then | ||
| exit 1 | ||
| fi | ||
| working-directory: ${{ env.ASV_DIR }} | ||
|
|
||
| - name: Add instructions to artifact | ||
| if: always() | ||
| run: | | ||
| cp benchmarks/README_CI.md benchmarks.log .asv/results/ | ||
| working-directory: ${{ env.ASV_DIR }} | ||
|
|
||
| - uses: actions/upload-artifact@v2 | ||
| if: always() | ||
| with: | ||
| name: asv-benchmark-results-${{ runner.os }} | ||
| path: ${{ env.ASV_DIR }}/.asv/results |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,96 @@ | ||
| cff-version: 1.2.0 | ||
| message: "If you use this software, please cite it as below." | ||
| authors: | ||
| - family-names: "Hoyer" | ||
| given-names: "Stephan" | ||
| orcid: "https://orcid.org/0000-0002-5207-0380" | ||
| - family-names: "Roos" | ||
| given-names: "Maximilian" | ||
| - family-names: "Joseph" | ||
| given-names: "Hamman" | ||
| orcid: "https://orcid.org/0000-0001-7479-8439" | ||
| - family-names: "Magin" | ||
| given-names: "Justus" | ||
| - family-names: "Cherian" | ||
| given-names: "Deepak" | ||
| orcid: "https://orcid.org/0000-0002-6861-8734" | ||
| - family-names: "Fitzgerald" | ||
| given-names: "Clark" | ||
| orcid: "https://orcid.org/0000-0003-3446-6389" | ||
| - family-names: "Hauser" | ||
| given-names: "Mathias" | ||
| orcid: "https://orcid.org/0000-0002-0057-4878" | ||
| - family-names: "Fujii" | ||
| given-names: "Keisuke" | ||
| orcid: "https://orcid.org/0000-0003-0390-9984" | ||
| - family-names: "Maussion" | ||
| given-names: "Fabien" | ||
| orcid: "https://orcid.org/0000-0002-3211-506X" | ||
| - family-names: "Imperiale" | ||
| given-names: "Guido" | ||
| - family-names: "Clark" | ||
| given-names: "Spencer" | ||
| orcid: "https://orcid.org/0000-0001-5595-7895" | ||
| - family-names: "Kleeman" | ||
| given-names: "Alex" | ||
| - family-names: "Nicholas" | ||
| given-names: "Thomas" | ||
| orcid: "https://orcid.org/0000-0002-2176-0530" | ||
| - family-names: "Kluyver" | ||
| given-names: "Thomas" | ||
| orcid: "https://orcid.org/0000-0003-4020-6364" | ||
| - family-names: "Westling" | ||
| given-names: "Jimmy" | ||
| - family-names: "Munroe" | ||
| given-names: "James" | ||
| orcid: "https://orcid.org/0000-0001-9098-6309" | ||
| - family-names: "Amici" | ||
| given-names: "Alessandro" | ||
| orcid: "https://orcid.org/0000-0002-1778-4505" | ||
| - family-names: "Barghini" | ||
| given-names: "Aureliana" | ||
| - family-names: "Banihirwe" | ||
| given-names: "Anderson" | ||
| orcid: "https://orcid.org/0000-0001-6583-571X" | ||
| - family-names: "Bell" | ||
| given-names: "Ray" | ||
| orcid: "https://orcid.org/0000-0003-2623-0587" | ||
| - family-names: "Hatfield-Dodds" | ||
| given-names: "Zac" | ||
| orcid: "https://orcid.org/0000-0002-8646-8362" | ||
| - family-names: "Abernathey" | ||
| given-names: "Ryan" | ||
| orcid: "https://orcid.org/0000-0001-5999-4917" | ||
| - family-names: "Bovy" | ||
| given-names: "Benoît" | ||
| - family-names: "Omotani" | ||
| given-names: "John" | ||
| orcid: "https://orcid.org/0000-0002-3156-8227" | ||
| - family-names: "Mühlbauer" | ||
| given-names: "Kai" | ||
| orcid: "https://orcid.org/0000-0001-6599-1034" | ||
| - family-names: "Roszko" | ||
| given-names: "Maximilian K." | ||
| orcid: "https://orcid.org/0000-0001-9424-2526" | ||
| - family-names: "Wolfram" | ||
| given-names: "Phillip J." | ||
| orcid: "https://orcid.org/0000-0001-5971-4241" | ||
| title: "xarray" | ||
| doi: 10.5281/zenodo.598201 | ||
| url: "https://github.com/pydata/xarray" | ||
| preferred-citation: | ||
| type: article | ||
| authors: | ||
| - family-names: "Hoyer" | ||
| given-names: "Stephan" | ||
| orcid: "https://orcid.org/0000-0002-5207-0380" | ||
| - family-names: "Joseph" | ||
| given-names: "Hamman" | ||
| orcid: "https://orcid.org/0000-0001-7479-8439" | ||
| doi: "10.5334/jors.148" | ||
| journal: "Journal of Open Research Software" | ||
| month: 4 | ||
| title: "xarray: N-D labeled Arrays and Datasets in Python" | ||
| volume: 5 | ||
| issue: 1 | ||
| year: 2017 |
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