bump to 0.3.4

GangCaoLab · Mar 9, 2021 · b5c803d · b5c803d
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commit b5c803d
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Showing 6 changed files with 13 additions and 19 deletions.
diff --git a/coolbox/__init__.py b/coolbox/__init__.py
@@ -1 +1 @@
-__version__ = '0.3.3'
+__version__ = '0.3.4'
diff --git a/docker/Dockerfile b/docker/Dockerfile
@@ -6,13 +6,13 @@ LABEL version="1"
 LABEL software="CoolBox"
 LABEL software.version="latest"
 LABEL website="https://github.com/Nanguage/CoolBox"
-LABEL documentation="https://github.com/Nanguage/CoolBox/wiki"
+LABEL documentation="https://gangcaolab.github.io/CoolBox/index.html"
 LABEL license="https://github.com/Nanguage/CoolBox/blob/master/LICENSE"
 LABEL tags="Bioinformatics,Genomics,Hi-C,Visualization"
 
 MAINTAINER [email protected]
 
-ENV version=0.2.1
+ENV version=0.3.4
 
 ENV MINICONDA https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
 

diff --git a/docs/source/installation.md b/docs/source/installation.md
@@ -18,7 +18,7 @@ $ git clone https://github.com/GangCaoLab/CoolBox.git
 $ cd CoolBox
 $ conda env create --file environment.yml
 $ conda activate coolbox
-$ python -m pip install . -vv
+$ python setup.py install
 ```
 
 Enable `ipywidgets` to use the browser in Jupyter notebook:
@@ -42,11 +42,9 @@ interactively explore their genomic data.
 
 For this purpose, you can reference this
 [Quickstart (API) page](https://gangcaolab.github.io/CoolBox/quick_start_API.html).
-
-
 Or just import `coolbox` as a
 Python plot package use in their own plot
-script(see [example](https://todo)).
+script.
 
 
 ### CLI

diff --git a/environment.yml b/environment.yml
@@ -11,4 +11,3 @@ dependencies:
   - pairix
   - tabix
   - samtools>=1.10
-  - libcurl
diff --git a/requirements.txt b/requirements.txt
@@ -1,22 +1,18 @@
-scipy
+scipy>=1.0.0
 numpy
 pandas
 statsmodels
-matplotlib
-jupyter
-ipywidgets
+matplotlib>=3.1.1
+jupyter>=1.0.0
+ipywidgets>=7.5.1
 nbformat
 voila
 svgutils
-
 intervaltree
 dna_features_viewer
-
 h5py
 cooler
 pybbi
-
 numpydoc
 fire
-
-pytest
+pytest
diff --git a/setup.py b/setup.py
@@ -7,8 +7,9 @@
     "Operating System :: POSIX",
     "Programming Language :: Python",
     "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3.6",
     "Programming Language :: Python :: 3.7",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
     "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
     "Intended Audience :: Science/Research",
     "Topic :: Scientific/Engineering :: Bio-Informatics",
@@ -62,5 +63,5 @@ def get_install_requires():
     zip_safe=False,
     classifiers=classifiers,
     install_requires=get_install_requires(),
-    python_requires='>=3.6, <4',
+    python_requires='>=3.7, <4',
 )
-Original file line number
+Diff line change
@@ Expand Up / @@ -11,4 +11,3 @@ dependencies: @@
       - pairix
       - tabix
       - samtools>=1.10
-      - libcurl