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Add autoSql to the bigBed "About this track" dialog #1519

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merged 4 commits into from
Dec 3, 2020

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cmdcolin
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@cmdcolin cmdcolin commented Dec 2, 2020

Just a small proposal to add functional tracks for protein-to-genome mappings

Source
http://genome.ucsc.edu/goldenPath/newsarch.html#120220

Directly linked to bigbeds on the ucsc server

Used script like this to load

 while read p; do echo $p; jbrowse add-track $p --out test_data/config_demo.json --category Uniprot --assemblyNames hg38 --trackId `basename $p .bb`_hg38; done < test.txt

after creating a text.txt with multiple URLs

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codecov bot commented Dec 3, 2020

Codecov Report

Merging #1519 (cfb109c) into master (8116da7) will decrease coverage by 0.00%.
The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #1519      +/-   ##
==========================================
- Coverage   59.47%   59.46%   -0.01%     
==========================================
  Files         435      435              
  Lines       19514    19514              
  Branches     4554     4554              
==========================================
- Hits        11605    11604       -1     
- Misses       7610     7611       +1     
  Partials      299      299              
Impacted Files Coverage Δ
...ins/wiggle/src/LinearWiggleDisplay/models/model.ts 81.98% <0.00%> (-0.91%) ⬇️

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@cmdcolin cmdcolin merged commit e81b482 into master Dec 3, 2020
@cmdcolin cmdcolin changed the title Add some uniprot tracks to demo data Add autoSql to bigBed about this track dialog and add sample uniprot,gnomad,dgv,snp tracks Dec 3, 2020
@cmdcolin cmdcolin deleted the add_uniprot_tracks branch December 3, 2020 17:31
@cmdcolin cmdcolin added the enhancement New feature or request label Dec 21, 2020
@cmdcolin cmdcolin changed the title Add autoSql to bigBed about this track dialog and add sample uniprot,gnomad,dgv,snp tracks Add autoSql to the bigBed "About this track" dialog Dec 21, 2020
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