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GMOD · Feb 19, 2021 · 1e0643b · 1e0643b
1 parent 26dc3da
commit 1e0643b
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Showing 2 changed files with 8 additions and 13 deletions.
diff --git a/packages/core/util/index.ts b/packages/core/util/index.ts
@@ -770,11 +770,6 @@ export async function renameRegionsIfNeeded<
     regions: [...(args.regions || [])],
   }
 
-  // configs can choose to not be associated with the assemblyManager (as with
-  // the "read assembly" in the read vs ref comparisons) and in this case a
-  // special flag exists (currently set on the FromConfigSequenceAdapter)
-  // called noAssemblyManager
-  // @ts-ignore
   if (assemblyName) {
     const refNameMap = await assemblyManager.getRefNameMapForAdapter(
       adapterConfig,

diff --git a/plugins/config/src/FromConfigAdapter/FromConfigSequenceAdapter.test.ts b/plugins/config/src/FromConfigAdapter/FromConfigSequenceAdapter.test.ts
@@ -54,12 +54,12 @@ test('adapter can fetch sequences', async () => {
   expect(featuresArray.length).toBe(1)
   expect(featuresArray[0].get('seq')).toBe(features[0].seq.slice(0, 50))
 
-  //   const result2 = adapter.getFeatures({
-  //     refName: 'ctgA',
-  //     start: 100,
-  //     end: 150,
-  //   })
-  //   const featuresArray2 = await result2.pipe(toArray()).toPromise()
-  //   expect(featuresArray2.length).toBe(1)
-  //   expect(featuresArray2[0].get('seq')).toBe(features[0].seq.slice(100, 150))
+  const result2 = adapter.getFeatures({
+    refName: 'ctgA',
+    start: 5050,
+    end: 5150,
+  })
+  const featuresArray2 = await result2.pipe(toArray()).toPromise()
+  expect(featuresArray2.length).toBe(1)
+  expect(featuresArray2[0].get('seq')).toBe(features[0].seq.slice(50, 150))
 })