v0.2.0

cellpypes has matured under feedback from colleagues. New features:

• use Negative Binomial instead of Poisson
• classify has knn_refine argument
• pype_from_seurat has parameter graph_name now (#17).
• you can pype Seurat objects directly into rule / feat without calling pype_from_seurat
• minor:
  • pype_code_template checks it's input is integer

cellpypes v0.1.13

Fully functional version of cellpypes with data set simulated_umis and the following functions:

• feat
• rule
• plot_last
• plot_classes
• classify
• pype_from_seurat
• pseudobulk
• pseudobulk_id
• find_knn
• class_to_deseq2
• pype_code_template
• pool_across_neighbors

This release is available on CRAN as well.