Add submission scripts for python scripts for hera specifically (NOAA…

…-EMC#412)

* Add submission scripts for python scripts for hera specifically

* Updated scripts to remove hard coded paths and incorporate better practices and helpful usage statements

* Typo in usage statement - there are six command line arguements

ush/Python/sq_job.sh

@@ -0,0 +1,72 @@
+#!/bin/sh
+
+#SBATCH --account=an_account
+#SBATCH --qos=batch
+#SBATCH --ntasks=4
+#SBATCH --time=0:20:00
+#SBATCH --job-name="plot_allvars"
+#SBATCH --out=plot_allvars.out
+
+# Prior to submitting the script the following environment variables
+# must be set using export or setenv
+# HOMErrfs=/path-to/ufs-srweather-app/regional_workflow
+# EXPTDIR=/path-to/expt_dirs/your_experiment
+
+cd ${HOMErrfs}/ush/Python
+set -x
+. /apps/lmod/lmod/init/sh
+
+module purge
+module load hpss
+
+############
+# Python environment for Jet and Hera
+module use -a /contrib/miniconda3/modulefiles
+module load miniconda3
+conda activate pygraf
+
+############
+# Python environment for Orion
+############
+#module use -a /apps/contrib/miniconda3-noaa-gsl/modulefiles
+#module load miniconda3
+#conda activate pygraf
+
+############
+# Python environment for Gaea
+############
+#module use -a /apps/contrib/miniconda3-noaa-gsl/modulefiles
+#module load miniconda3
+#conda activate pygraf
+
+############
+# Path to shape files
+############
+#Hera:
+SHAPE_FILES=/scratch2/NCEPDEV/fv3-cam/Chan-hoo.Jeon/tools/NaturalEarth
+#Jet: 
+#Orion: 
+#SHAPE_FILES=/home/chjeon/tools/NaturalEarth
+#Gaea: 
+
+export GLOBAL_VAR_DEFNS_FP="${EXPTDIR}/var_defns.sh"
+source ${GLOBAL_VAR_DEFNS_FP}
+export CDATE=${DATE_FIRST_CYCL}${CYCL_HRS}
+export FCST_START=6
+export FCST_END=${FCST_LEN_HRS}
+export FCST_INC=6
+
+# Usage statement:	Make sure all the necessary modules can be imported.
+#                       Six command line arguments are needed:
+#                       1. Cycle date/time in YYYYMMDDHH format
+#                       2. Starting forecast hour in HHH format
+#                       3. Ending forecast hour in HHH format
+#                       4. Forecast hour increment
+#                       5. EXPT_DIR: Experiment directory
+#                          -Postprocessed data should be found in the directory:
+#                            EXPT_DIR/YYYYMMDDHH/postprd/
+#                       6. CARTOPY_DIR:  Base directory of cartopy shapefiles
+#                          -File structure should be:
+#                            CARTOPY_DIR/shapefiles/natural_earth/cultural/*.shp
+
+python plot_allvars.py ${CDATE} ${FCST_START} ${FCST_END} ${FCST_INC} ${EXPTDIR} ${SHAPE_FILES}

ush/Python/sq_job_diff.sh

@@ -0,0 +1,76 @@
+#!/bin/sh
+
+#SBATCH --account=an_account
+#SBATCH --qos=batch
+#SBATCH --ntasks=8
+#SBATCH --time=0:30:00
+#SBATCH --job-name="plot_allvars_diff"
+#SBATCH --out=plot_allvars.out
+
+# Prior to submitting the script the following environment variables
+# must be set using export or setenv
+# HOMErrfs=/path-to/ufs-srweather-app/regional_workflow
+# EXPTDIR1=/path-to/expt_dirs/your_experiment1
+# EXPTDIR2=/path-to/expt_dirs/your_experiment2
+
+cd ${HOMErrfs}/ush/Python
+set -x
+. /apps/lmod/lmod/init/sh
+
+module purge
+module load hpss
+
+############
+# Python environment for Jet and Hera
+module use -a /contrib/miniconda3/modulefiles
+module load miniconda3
+conda activate pygraf
+
+############
+# Python environment for Orion
+############
+#module use -a /apps/contrib/miniconda3-noaa-gsl/modulefiles
+#module load miniconda3
+#conda activate pygraf
+
+############
+# Python environment for Gaea
+############
+#module use -a /apps/contrib/miniconda3-noaa-gsl/modulefiles
+#module load miniconda3
+#conda activate pygraf
+
+############
+# Path to shape files
+############
+#Hera:
+SHAPE_FILES=/scratch2/NCEPDEV/fv3-cam/Chan-hoo.Jeon/tools/NaturalEarth
+#Jet: 
+#Orion: 
+#SHAPE_FILES=/home/chjeon/tools/NaturalEarth
+#Gaea: 
+
+export GLOBAL_VAR_DEFNS_FP="${EXPTDIR}/var_defns.sh"
+source ${GLOBAL_VAR_DEFNS_FP}
+export CDATE=${DATE_FIRST_CYCL}${CYCL_HRS}
+export FCST_START=6
+export FCST_END=${FCST_LEN_HRS}
+export FCST_INC=3
+
+# Usage statement:	Make sure all the necessary modules can be imported.
+#                       Seven command line arguments are needed:
+#                       1. Cycle date/time in YYYYMMDDHH format
+#                       2. Starting forecast hour
+#                       3. Ending forecast hour
+#                       4. Forecast hour increment
+#                       5. EXPT_DIR_1: Experiment 1 directory
+#                          -Postprocessed data should be found in the directory:
+#                            EXPT_DIR_1/YYYYMMDDHH/postprd/
+#                       6. EXPT_DIR_2: Experiment 2 directory
+#                          -Postprocessed data should be found in the directory:
+#                            EXPT_DIR_2/YYYYMMDDHH/postprd/
+#                       7. CARTOPY_DIR:  Base directory of cartopy shapefiles
+#                          -File structure should be:
+#                            CARTOPY_DIR/shapefiles/natural_earth/cultural/*.shp
+
+python plot_allvars_diff.py ${CDATE} ${FCST_START} ${FCST_END} ${FCST_INC} ${EXPTDIR1} ${EXPTDIR2} ${SHAPE_FILES}