Update regional_workflow for use with authoritative UFS_UTILS utiliti…

…es and add support for global/regional grib2 functionality in chgres_cube (NOAA-EMC#274)

* Remove all references to /lfs3 on Jet

* Add Ben and Ratko to the CODEOWNERS file

* Replace hard-coded make_orog module file with build-level module file in UFS_UTILS

* Remove hard-coded make_sfc_climo module file

* Add changes for merged chgres_cube code

* Add changes for merged chgres_cube code

* Minor tweak to FCST_LEN_HRS default in config.community.sh

* Changes to make the release version of chgres_cube run in regional_workflow

* Changes for regional_grid build on Jet

* Changes to regional_grid build for Hera

* Change regional_grid makefile for hera

* Remove leading zero from FCST_LEN_HRS in config.community.sh

* Remove /sorc directory

* Remove build module files for codes originally in the regional_workflow repository.  Remove run-time make_grid module file for all platforms.  Will be sourced from UFS_UTILS from now on.

* Update regional grid template for newest code

* Copy make_grid module file from UFS_UTILS

* Add make_grid.local file for most platforms

* Remove alpha and kappa parameters from the regional_grid namelist

* Modifications to file type conventions in the chgres_cube namelist for FV3GFS and GSMGFS nemsio files

* Set convert_nst=False for global grib2 FV3GFS files when running chgres_cube

* Add tracers back into nemsio file processing

* Changes to the make_lbcs ex-script (remove all surface-related variables)

* Fix for modulefiles

* Fixes after merging authoritative repo into fork

* Add Thompson climo to chgres_cube namelist for appropriate external model/SDF combinations

* Commit new locations for Thompson climo fix file

* Change FIXsar to FIXLAM

* Change gfs_bndy.nc to gfs.bndy.nc

* Move file

* Bug fixes to setup.sh and exregional_make_ics.sh

* Add support for NAM grib2 files

* Path fix

* Typo fix

* Fix extension on UPP grib2 files

* Bug fix for if statement

* Add .grib2 extension to soft links

* Fix nsoill_out values based on LSM scheme in CCPP suite

* Fix grib2 extensions

* Add if statement for varmap tables when using Thompson MP and initializing from non-RAP/HRRR data

* Final modifications to support NAM grib2 files in regional_workflow

* Set climo as default for soil variables when using HRRRX (user will need change this if they know these variables are available for the dates they are running).

* Add FV3_CPT_v0 to varmap if statement

* Changes to post file names to make model lowercase and move ${fhr} to three values instead of two

* Change "rrfs" to "${NET}" instead

* Revert "Add FV3_CPT_v0 to varmap if statement"

This reverts commit b04ad0b3c8c554f664c6790030a4f33b5a395023.

* Add HALO_BLEND back into config_defaults.sh

* Set do_deep=false for RRFS_v1beta and other RAP/HRRR suites

* Fix if statement for lsoil variable in generate step.

* Remove link to fixed file in UFS_UTILS source code directory, now points to FIXgsm

* Typo in config_defaults.sh and remove unused SDFs from the make_ics/lbcs scripts, from Gerard's PR

* Add FV3_CPT_v0 to list of SDFs that use the GFS varmap table

* Remove wgrib2 module load from local make_ics/lbcs files

* Use correct system calls for setting up Cheyenne python environment now that these are proper modulefiles

Co-authored-by: Michael Kavulich, Jr <[email protected]>

jobs/JREGIONAL_MAKE_ICS

@@ -91,16 +91,6 @@ esac
 #
 #-----------------------------------------------------------------------
 #
-# Find the directory in which the wgrib2 executable is located.
-#
-#-----------------------------------------------------------------------
-#
-wgrib2_dir=$( which wgrib2 ) || print_err_msg_exit "\
-Directory in which the wgrib2 executable is located could not be found:
-  wgrib2_dir = \"${wgrib2_dir}\""
-#
-#-----------------------------------------------------------------------
-#
 # Set the name of and create the directory in which the output from this
 # script will be placed (if that directory doesn't already exist).
 #
@@ -117,7 +107,6 @@ mkdir_vrfy -p "${ics_dir}"
 #
 $SCRIPTSDIR/exregional_make_ics.sh \
   ics_dir="${ics_dir}" \
-  wgrib2_dir="${wgrib2_dir}" \
   APRUN="${APRUN}" || \
 print_err_msg_exit "\
 Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."

jobs/JREGIONAL_MAKE_LBCS

@@ -92,16 +92,6 @@ esac
 #
 #-----------------------------------------------------------------------
 #
-# Find the directory in which the wgrib2 executable is located.
-#
-#-----------------------------------------------------------------------
-#
-wgrib2_dir=$( which wgrib2 ) || print_err_msg_exit "\
-Directory in which the wgrib2 executable is located could not be found:
-  wgrib2_dir = \"${wgrib2_dir}\""
-#
-#-----------------------------------------------------------------------
-#
 # Set the name of and create the directory in which the output from this
 # script will be placed (if it doesn't already exist).
 #
@@ -118,7 +108,6 @@ mkdir_vrfy -p "${lbcs_dir}"
 #
 $SCRIPTSDIR/exregional_make_lbcs.sh \
   lbcs_dir="${lbcs_dir}" \
-  wgrib2_dir="${wgrib2_dir}" \
   APRUN="${APRUN}" || \
 print_err_msg_exit "\
 Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."

modulefiles/tasks/cheyenne/make_grid.local

@@ -0,0 +1,9 @@
+
+if [module-info mode load] {
+  system "ncar_pylib /glade/p/ral/jntp/UFS_CAM/ncar_pylib_20200427"
+}
+
+if [module-info mode remove] {
+  system "deactivate"
+}
+

modulefiles/tasks/cheyenne/make_ics.local

@@ -1,2 +1,9 @@
 
-ncar_pylib /glade/p/ral/jntp/UFS_CAM/ncar_pylib_20200427
+if [module-info mode load] {
+  system "ncar_pylib /glade/p/ral/jntp/UFS_CAM/ncar_pylib_20200427"
+}
+
+if [module-info mode remove] {
+  system "deactivate"
+}
+

modulefiles/tasks/cheyenne/make_lbcs.local

@@ -1,2 +1,9 @@
 
-ncar_pylib /glade/p/ral/jntp/UFS_CAM/ncar_pylib_20200427
+if [module-info mode load] {
+  system "ncar_pylib /glade/p/ral/jntp/UFS_CAM/ncar_pylib_20200427"
+}
+
+if [module-info mode remove] {
+  system "deactivate"
+}
+

modulefiles/tasks/cheyenne/run_fcst.local

@@ -1,2 +1,9 @@
 
-system "ncar_pylib /glade/p/ral/jntp/UFS_CAM/ncar_pylib_20200427"
+if [module-info mode load] {
+  system "ncar_pylib /glade/p/ral/jntp/UFS_CAM/ncar_pylib_20200427"
+}
+
+if [module-info mode remove] {
+  system "deactivate"
+}
+

modulefiles/tasks/hera/make_grid.local

@@ -0,0 +1,6 @@
+
+module use -a /contrib/miniconda3/modulefiles
+module load miniconda3
+if [module-info mode load] {
+  system "conda activate regional_workflow"
+}

modulefiles/tasks/hera/make_ics.local

@@ -1,5 +1,6 @@
-module load wgrib2
 
 module use -a /contrib/miniconda3/modulefiles
 module load miniconda3
-conda activate regional_workflow
+if [module-info mode load] {
+  system "conda activate regional_workflow"
+}

modulefiles/tasks/hera/make_lbcs.local

@@ -1,5 +1,6 @@
-module load wgrib2
 
 module use -a /contrib/miniconda3/modulefiles
 module load miniconda3
-conda activate regional_workflow
+if [module-info mode load] {
+  system "conda activate regional_workflow"
+}

modulefiles/tasks/jet/make_grid.local

@@ -0,0 +1,6 @@
+
+module use -a /contrib/miniconda3/modulefiles
+module load miniconda3
+if [module-info mode load] {
+  system "conda activate regional_workflow"
+}

modulefiles/tasks/jet/make_ics.local

@@ -2,4 +2,6 @@ module load wgrib2/2.0.8
 
 module use -a /contrib/miniconda3/modulefiles
 module load miniconda3
-conda activate regional_workflow
+if [module-info mode load] {
+  system "conda activate regional_workflow"
+}

modulefiles/tasks/jet/make_lbcs.local

@@ -2,4 +2,6 @@ module load wgrib2/2.0.8
 
 module use -a /contrib/miniconda3/modulefiles
 module load miniconda3
-conda activate regional_workflow
+if [module-info mode load] {
+  system "conda activate regional_workflow"
+}