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refreshing and extending IAO import, FOODON import
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pbuttigieg committed Mar 21, 2018
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18 changes: 17 additions & 1 deletion src/envo/envo-edit.owl
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Expand Up @@ -26467,7 +26467,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000912> ObjectSomeValuesFrom(<
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Cloud_condensation_nuclei") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01000913> "A process during which a solid particle or liquid droplet catalyses the condensation of water vapour in an atmosphere.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_01000913> "cloud seeding process")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01000913> "nucleation of cloud condensation"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000913> <http://purl.obolibrary.org/obo/ENVO_02500000>)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000913> <http://purl.obolibrary.org/obo/ENVO_02500003>)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000913> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000066> <http://purl.obolibrary.org/obo/ENVO_01000267>))
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000913> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> <http://purl.obolibrary.org/obo/ENVO_01000266>))
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01000913> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/BFO_0000040> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000086> ObjectUnionOf(<http://purl.obolibrary.org/obo/PATO_0001546> <http://purl.obolibrary.org/obo/PATO_0001548>)))))
Expand Down Expand Up @@ -27428,6 +27428,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001022> ObjectComplementOf(<ht

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Radiation") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001023> "A process during which energy is emitted or transmitted in the form of waves or particles through space or a material medium.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/ENVO_01001023> "Requires addition of waves for full axiomatisation. This should be linked to \"subatomic particle\" with an \"or\". Note that ENVO represents space as an environmental material (a hard vacuum with sparse material inclusions).")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001023> "environmental_hazards")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001023> "envoAstro")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001023> "radiation"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001023> <http://purl.obolibrary.org/obo/ENVO_02500000>)
Expand All @@ -27437,20 +27438,23 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001023> ObjectSomeValuesFrom(<
# Class: <http://purl.obolibrary.org/obo/ENVO_01001024> (particle radiation)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Particle_radiation") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001024> "A radiation process during which energy is transmitted or emitted by means of fast-moving subatomic particles.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001024> "environmental_hazards")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001024> "envoAstro")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001024> "particle radiation"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001024> <http://purl.obolibrary.org/obo/ENVO_01001023>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01001025> (particle beam radiation)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Particle_radiation") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001025> "A particle radiation process during which subatomic particles move in the same direction.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001025> "environmental_hazards")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001025> "envoAstro")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001025> "particle beam radiation"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001025> <http://purl.obolibrary.org/obo/ENVO_01001024>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01001026> (electromagnetic radiation)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Electromagnetic_radiation") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001026> "A radiation process during which waves (or their quanta, photons) of the electromagnetic field propagate (radiate) through space carrying electromagnetic energy.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001026> "environmental_hazards")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001026> "envoAstro")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_01001026> "Note that this class is concerned only with active radiative processes: static electric and magnetic fields are not inlcuded. All electromagnetic radiation carries radiant energy.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001026> "electromagnetic radiation"@en)
Expand Down Expand Up @@ -29186,6 +29190,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001210> <http://purl.obolibrar
# Class: <http://purl.obolibrary.org/obo/ENVO_01001211> (stellar radiation)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Electromagnetic_radiation") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Solar_irradiance") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001211> "An electromagnetic radiation process during which electromagnetic waves or their quanta are emitted from a star.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001211> "environmental_hazards")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001211> "envoAstro")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001211> "stellar radiation"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/ENVO_01001211> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_01001026> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002608> <http://purl.obolibrary.org/obo/ENVO_01000801>)))
Expand Down Expand Up @@ -29228,6 +29233,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001215> <http://purl.obolibrar

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISO 21348") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Ultraviolet") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001216> "A stellar radiation process during which electromagnetic waves or their quanta are emitted from a star at wavelengths between 10 nm and 400 nm.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/ENVO_01001216> "To be expanded to account for subtypes.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001216> "environmental_hazards")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001216> "envoAstro")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001216> "ultraviolet stellar radiation"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001216> <http://purl.obolibrary.org/obo/ENVO_01001211>)
Expand All @@ -29238,6 +29244,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000114> <http://purl.ob
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/X-ray") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001217> "A stellar radiation process during which penetrating electromagnetic radiation is emitted by high-energy electrons as they fall into a lower state of energy.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_01001217> "x ray stellar radiation")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_01001217> "xray stellar radiation")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001217> "environmental_hazards")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001217> "envoAstro")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/X-ray#Energy_ranges") rdfs:comment <http://purl.obolibrary.org/obo/ENVO_01001217> "Ambiguity exists in the definition of x-rays and their differentiation from gamma rays. Photons with sufficient energy to be classified as x-rays may be emitted by other processes than electrons falling to lower energy states. Most x-rays have wavelengths ranging from 0.01 to 10 nanometers, corresponding to frequencies in the range of 30 petahertz to 30 exahertz and energies in the range of 100 eV to 100 keV.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001217> "x-ray stellar radiation"@en)
Expand All @@ -29247,6 +29254,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001217> <http://purl.obolibrar

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000114> <http://purl.obolibrary.org/obo/ENVO_01001218> <http://purl.obolibrary.org/obo/IAO_0000428>)
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Gamma_ray") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001218> "A stellar radiation process during which penetrating electromagnetic radiation is emitted from the radioactive decay (gamma decay) of atomic nuclei.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001218> "environmental_hazards")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001218> "envoAstro")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Gamma_ray") rdfs:comment <http://purl.obolibrary.org/obo/ENVO_01001218> "Ambiguity exists in the definition of gamma rays. As a rule of thumb, gamma rays have energies above 100 keV, frequencies above 10 exahertz, and wavelengths less than 10 picometers. However, regardless of the energy released, electromagnetic radiation from radioactive decay of atomic nuclei is referred to as \"gamma rays\". In astronomy, however, gamma rays are defined by their energy, and no production process needs to be specified.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001218> "gamma-ray stellar radiation"@en)
Expand Down Expand Up @@ -29894,19 +29902,22 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001294> <http://purl.obolibrar

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "http://www.emdat.be/Glossary") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001295> "A warm-core cyclone which occurs in the middle and high latitudes, primarily drawing energy from horizontal temperature contrasts between atmospheric fronts.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_01001295> "mid-latitude cyclone")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001295> "environmental_hazards")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "http://www.emdat.be/Glossary") rdfs:comment <http://purl.obolibrary.org/obo/ENVO_01001295> "\"When associated with cold fronts, extratropical cyclones may be particularly damaging (e.g. European winter/windstorm, Nor’easter).\"")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001295> "extra-tropical cyclone"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001295> <http://purl.obolibrary.org/obo/ENVO_01001298>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01001296> (tropical storm)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "http://www.emdat.be/Glossary") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001296> "A an atmospheric storm which originates over tropical or subtropical waters and possesses a warm-core, non-frontal synoptic-scale cyclone with a low pressure centre, spiral rain bands and strong winds.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001296> "environmental_hazards")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001296> "tropical storm"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001296> <http://purl.obolibrary.org/obo/ENVO_01000877>)

# Class: <http://purl.obolibrary.org/obo/ENVO_01001297> (cyclone)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Cyclone") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001297> "An atmospheric storm during which a large air mass rotates around a centre of low atmospheric pressure, generating winds which spiral towards that centre.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001297> "environmental_hazards")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001297> "cyclone"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001297> <http://purl.obolibrary.org/obo/ENVO_01000877>)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001297> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000057> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/ENVO_01001300> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000086> <http://purl.obolibrary.org/obo/PATO_0002268>))))
Expand All @@ -29915,6 +29926,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001297> ObjectSomeValuesFrom(<

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://en.wikipedia.org/wiki/Cyclone") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_01001298> "A cyclone which rotates around an area low atmospheric pressure with increased temperature.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_01001298> "warm-core cyclone")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_01001298> "environmental_hazards")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_01001298> "The threshold of what is \"warm\" is variable, and thus data-level thresholding should be applied when using this class.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_01001298> "warm core cyclone"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_01001298> <http://purl.obolibrary.org/obo/ENVO_01001297>)
Expand Down Expand Up @@ -32876,6 +32888,10 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/UBERON_0015474> "skin of axilla"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_0015474> "axilla skin"^^xsd:string)

# Class: <http://purl.unep.org/sdg/SDGIO_00010072> (ecosystem service)

SubClassOf(<http://purl.unep.org/sdg/SDGIO_00010072> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002218> <http://purl.obolibrary.org/obo/ENVO_01001110>))


SubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/ENVO_2100001> <http://purl.obolibrary.org/obo/BFO_0000050>) <http://purl.obolibrary.org/obo/ENVO_2100007>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_09200020> "ground water nitrate concentration")
Expand Down
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